Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 0.0e+00 1191.4 593 100.0
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 0.0e+00 1112.8 593 92.9
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 9.4e-259 896.7 594 75.1
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 7.9e-250 867.1 601 71.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 4.4e-248 861.3 596 73.5
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 7.7e-245 850.5 598 71.2
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 3.8e-244 848.2 598 72.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 9.4e-243 843.6 598 72.1
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 6.1e-242 840.9 596 69.5
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.2e-240 836.6 622 68.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-238 829.3 593 69.0
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.6e-237 826.2 599 69.4
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 4.5e-237 824.7 597 69.8
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.8e-236 821.6 600 69.3
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.2e-235 818.1 600 69.2
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 9.4e-235 817.0 597 68.7
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.2e-234 816.6 600 69.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 4.7e-234 814.7 599 68.8
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.3e-233 812.4 593 68.6
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 1.2e-232 810.1 593 68.5
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 2.6e-232 808.9 600 69.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-231 805.8 593 68.0
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 6.3e-231 804.3 597 68.2
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.8e-230 802.7 593 68.0
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.6e-229 799.7 593 67.6
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 2.7e-229 798.9 595 67.4
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 5.0e-228 794.7 595 67.1
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.1e-227 793.5 593 68.1
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.2e-227 792.0 596 67.4
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 2.0e-224 782.7 594 66.5
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 3.4e-224 781.9 602 65.1
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.7e-223 779.6 593 65.9
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 3.7e-223 778.5 597 65.3
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 4.9e-223 778.1 600 66.2
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 8.3e-223 777.3 594 64.5
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.1e-222 775.4 602 65.0
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.2e-222 773.9 598 64.7
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.6e-221 773.1 596 64.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.6e-221 773.1 600 65.5
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 5.9e-221 771.2 617 64.3
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.3e-220 770.0 629 62.6
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 5.6e-219 764.6 596 66.8
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 9.5e-219 763.8 596 65.1
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.4e-217 760.0 596 64.8
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.8e-217 759.6 595 64.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.8e-217 759.6 595 63.9
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.0e-217 758.8 602 64.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 3.0e-217 758.8 605 65.1
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 8.9e-217 757.3 671 59.0
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.6e-216 755.7 595 63.2
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-216 755.7 597 63.8
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.7e-215 753.1 596 63.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 2.9e-215 752.3 598 63.5
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.9e-215 751.5 597 64.5
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.4e-215 751.1 592 63.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 3.2e-214 748.8 596 63.3
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 5.4e-214 748.0 596 64.8
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 9.2e-214 747.3 597 64.2
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.6e-213 746.5 596 63.6
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.0e-213 746.1 666 58.1
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 5.9e-213 744.6 593 62.1
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.9e-213 744.6 596 62.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.0e-212 743.8 612 61.6
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.9e-211 739.6 595 62.7
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.6e-210 736.5 557 66.1
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 4.7e-210 734.9 595 61.8
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 5.2e-209 731.5 594 61.4
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 5.8e-208 728.0 594 61.4
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.9e-207 725.7 595 62.9
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.1e-206 723.8 595 61.8
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 7.0e-206 721.1 504 72.2
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.7e-205 719.2 598 62.5
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 3.5e-205 718.8 596 61.2
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 6.0e-205 718.0 605 61.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 3.0e-204 715.7 612 60.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 8.6e-204 714.1 594 62.3
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 5.6e-203 711.4 605 60.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 4.7e-202 708.4 597 61.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.0e-201 705.3 596 60.7
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.2e-201 704.9 599 61.3
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 6.8e-201 704.5 601 61.6
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.4e-200 702.2 533 64.7
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.8e-200 701.4 554 63.7
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 7.5e-200 701.0 597 61.8
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 8.3e-199 697.6 561 63.5
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 2.4e-198 696.0 595 60.2
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 2.1e-197 693.0 595 60.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 3.5e-197 692.2 635 56.5
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 6.0e-197 691.4 597 59.8
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 6.0e-197 691.4 597 59.8
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 3.0e-196 689.1 595 59.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 5.1e-196 688.3 595 58.0
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 8.6e-196 687.6 597 59.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 7.3e-195 684.5 597 58.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 2.6e-184 649.4 595 56.5
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 5.8e-184 648.3 595 56.8
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.9e-184 647.5 577 58.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 9.6e-171 604.4 446 68.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.8e-170 602.8 607 52.2
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.2e-168 597.4 600 52.5
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.4e-166 590.5 609 51.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.1e-163 580.9 619 50.2
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.8e-162 575.5 468 65.6
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-160 570.9 521 58.2
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.6e-160 568.2 420 67.6
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 6.5e-159 565.1 526 57.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.2e-158 562.8 526 56.8
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 5.5e-158 562.0 613 50.4
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.4e-153 547.4 595 48.9
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 2.5e-150 536.6 599 47.6
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 6.7e-148 528.5 547 53.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 4.5e-136 489.2 398 61.8
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.2e-125 454.5 610 42.0
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.1e-117 425.6 566 42.9
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.2e-114 417.2 602 41.4
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.5e-112 409.5 279 74.2
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 3.4e-107 393.3 407 54.3
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 4.9e-106 389.4 613 37.2
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.4e-105 386.0 600 40.0
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.4e-105 386.0 305 61.0
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 9.8e-99 365.2 342 58.8
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 8.6e-95 352.1 249 68.7
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 4.0e-92 343.2 624 34.0
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.3e-82 311.6 462 42.6
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 5.6e-78 296.2 611 31.9
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 6.0e-72 276.2 250 57.6
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 4.9e-66 256.5 350 43.7
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 7.3e-62 242.7 281 46.6
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 9.6e-54 215.7 286 45.8
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 6.2e-53 213.0 166 66.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.1e-52 212.2 132 72.0
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.3e-47 195.3 580 29.7
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.6e-45 188.3 283 40.6
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 3.8e-42 177.2 131 60.3
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 2.5e-38 164.5 128 65.6
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.5e-38 164.5 134 62.7
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 4.1e-36 157.1 387 32.3
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 9.4e-33 146.0 116 63.8
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 9.1e-28 129.4 142 45.8
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 4.5e-27 127.1 94 60.6
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 6.5e-26 123.2 907 22.3
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-25 122.5 185 37.3
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.7e-21 107.5 82 67.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 3.9e-15 87.4 75 58.7
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.0e-14 85.1 88 47.7
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 9.1e-12 76.3 55 58.2
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.2e-11 75.9 58 62.1
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.2e-11 75.9 108 40.7
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.6e-11 74.7 43 72.1
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.0e-10 72.8 113 36.3
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.0e-10 72.8 113 36.3
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 1.3e-10 72.4 42 71.4
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 3.8e-10 70.9 42 71.4
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 8.5e-10 69.7 57 56.1
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.4e-07 62.4 35 82.9


User provided reference genes

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