Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 6.5e-159 563.9 269 100.0
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 1.3e-127 459.9 268 79.5
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.2e-125 453.4 258 80.6
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 1.2e-125 453.4 258 80.6
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 3.1e-124 448.7 258 79.8
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.5e-123 446.4 273 78.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.5e-123 446.4 258 79.8
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.2e-122 442.6 264 78.4
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 2.9e-122 442.2 264 78.4
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 2.4e-121 439.1 273 76.6
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 9.2e-121 437.2 265 77.4
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 2.1e-120 436.0 269 77.0
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 4.6e-120 434.9 259 77.2
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 2.3e-119 432.6 259 77.6
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 6.6e-119 431.0 273 75.8
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 8.6e-119 430.6 263 74.5
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 8.6e-119 430.6 263 74.5
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.9e-118 429.5 262 76.3
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 7.3e-118 427.6 259 76.1
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 7.3e-118 427.6 270 74.8
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 6.2e-117 424.5 264 74.2
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 2.3e-116 422.5 268 74.3
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 3.1e-116 422.2 264 73.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 3.1e-116 422.2 252 77.0
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 5.2e-116 421.4 259 74.9
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.2e-116 421.4 245 80.8
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 5.2e-116 421.4 260 76.5
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 6.8e-116 421.0 256 76.2
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.3e-114 416.8 264 75.8
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 2.2e-114 416.0 269 72.9
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.9e-114 415.6 264 74.2
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 4.9e-114 414.8 274 71.9
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.1e-113 413.7 264 73.5
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 1.4e-113 413.3 257 75.1
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.4e-113 412.5 264 73.1
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 5.4e-113 411.4 262 71.8
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 7.1e-113 411.0 264 72.7
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 7.1e-113 411.0 260 72.3
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 2.1e-112 409.5 272 72.4
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 6.0e-112 407.9 264 72.3
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 6.0e-112 407.9 264 73.1
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.3e-111 406.8 265 72.5
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 2.3e-111 406.0 265 72.8
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 3.0e-111 405.6 264 72.7
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 3.0e-111 405.6 270 68.5
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 3.9e-111 405.2 263 71.9
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 5.1e-111 404.8 270 71.5
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 6.6e-111 404.4 274 69.3
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.5e-110 403.3 264 72.0
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 3.3e-110 402.1 268 68.3
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 7.3e-110 401.0 264 73.5
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 2.8e-109 399.1 268 69.0
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 4.7e-109 398.3 259 70.7
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 6.2e-109 397.9 268 68.7
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.1e-108 397.1 286 66.4
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 1.4e-108 396.7 264 70.1
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.4e-108 396.7 289 65.7
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 3.1e-108 395.6 263 70.3
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 4.0e-108 395.2 248 72.2
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 4.0e-108 395.2 264 69.7
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 5.2e-108 394.8 263 71.1
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.2e-107 393.7 264 69.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.5e-107 393.3 263 69.6
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 2.0e-107 392.9 237 75.9
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 3.4e-107 392.1 264 68.2
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 6.4e-106 387.9 229 79.0
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.9e-105 386.3 263 70.0
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 1.9e-105 386.3 264 68.9
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.4e-105 386.0 273 68.5
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 2.3e-103 379.4 245 71.4
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.1e-101 372.9 233 75.5
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 8.1e-101 370.9 249 70.3
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 7.1e-97 357.8 244 70.5
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 9.3e-97 357.5 222 75.2
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 2.1e-96 356.3 254 64.6
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 4.6e-96 355.1 244 70.1
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 4.6e-96 355.1 292 61.0
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.9e-94 349.7 232 69.8
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 1.4e-92 343.6 247 66.0
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 5.8e-91 338.2 228 68.9
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.9e-89 333.2 229 68.1
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 4.6e-88 328.6 236 62.7
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 3.1e-84 315.8 204 71.6
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.0e-83 313.2 175 82.3
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.1e-81 307.4 193 71.5
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 2.5e-81 306.2 233 62.7
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 3.7e-77 292.4 183 72.1
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 5.3e-76 288.5 268 55.6
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 4.5e-75 285.4 279 51.3
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 5.0e-74 282.0 259 49.4
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.6e-72 275.8 241 50.6
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 3.0e-71 272.7 146 90.4
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 8.2e-69 264.6 185 67.6
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 1.3e-66 257.3 158 78.5
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.6e-56 222.6 136 72.1
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 7.0e-52 208.4 161 57.8
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.2e-51 207.6 136 73.5
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 4.5e-51 205.7 139 67.6
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.5e-51 205.7 131 76.3
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.5e-51 205.7 131 76.3
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 5.0e-50 202.2 153 66.0
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 3.6e-48 196.1 111 78.4
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.0e-47 194.5 129 67.4
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 6.5e-42 175.3 150 58.0
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 1.5e-33 147.5 89 71.9
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.6e-32 144.1 259 39.0
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 1.4e-31 141.0 268 32.1
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 3.7e-29 132.9 172 46.5
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 1.7e-26 124.0 111 55.9
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 3.3e-25 119.8 95 61.1
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 1.4e-23 114.4 70 74.3
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 5.4e-20 102.4 68 70.6
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.7e-16 89.4 44 88.6
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.7e-16 89.4 44 88.6
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 6.2e-16 89.0 68 63.2
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.4e-15 87.8 57 64.9
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 2.9e-13 80.1 156 30.8
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 8.6e-10 68.6 43 76.7
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 4.3e-09 66.2 54 55.6
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 7.3e-09 65.5 48 60.4
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.6e-08 64.3 74 47.3
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.6e-08 64.3 74 47.3
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 2.8e-08 63.5 43 65.1
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 3.6e-08 63.2 36 66.7
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.1e-07 61.6 38 73.7
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.1e-07 61.6 38 73.7
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 6.8e-07 58.9 83 42.2


User provided reference genes

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