Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.3e-153 547.0 364 100.0
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 7.8e-130 468.0 364 71.4
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 6.6e-129 464.9 364 75.8
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.7e-121 440.3 364 70.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 2.5e-120 436.4 284 81.3
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 3.5e-114 416.0 365 74.5
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.5e-112 410.6 368 76.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 5.6e-112 408.7 248 83.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.6e-111 407.1 253 81.4
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.8e-111 406.4 370 75.4
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 8.1e-111 404.8 252 82.1
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.4e-110 404.1 367 72.5
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.1e-110 402.9 255 81.2
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.1e-110 402.9 255 81.2
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 4.0e-110 402.5 255 81.6
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.8e-110 401.7 255 80.8
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.2e-108 396.7 255 79.6
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.4e-107 393.3 255 80.4
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 7.1e-107 391.7 253 80.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.2e-106 391.0 367 75.5
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.6e-106 390.6 250 80.8
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.1e-106 390.2 252 79.4
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.5e-106 389.4 365 66.6
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.3e-105 387.5 371 70.1
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 3.0e-105 386.3 367 69.8
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 5.1e-105 385.6 255 77.3
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 1.5e-104 384.0 252 78.6
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.9e-104 383.6 252 78.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.3e-104 382.5 248 79.8
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 5.6e-104 382.1 367 67.3
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 7.3e-104 381.7 257 77.8
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 7.3e-104 381.7 367 68.9
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 7.3e-104 381.7 367 68.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.8e-102 377.1 368 69.6
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 3.1e-102 376.3 369 68.0
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.0e-102 375.9 253 75.9
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 9.0e-102 374.8 253 78.3
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.5e-101 374.0 257 79.0
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 3.4e-101 372.9 367 74.1
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 3.4e-101 372.9 367 74.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.4e-100 368.2 265 72.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.1e-99 367.9 369 64.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.1e-99 367.9 368 58.7
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.4e-99 367.5 369 64.2
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.9e-99 367.1 369 63.4
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 5.4e-99 365.5 369 63.7
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-98 364.4 370 64.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.2e-98 364.4 370 64.9
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.6e-98 364.0 252 77.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.1e-98 363.6 369 65.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 2.7e-98 363.2 369 61.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.5e-98 362.8 369 59.3
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.5e-98 362.8 369 59.3
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.5e-98 362.8 365 71.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 4.6e-98 362.5 370 64.3
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.0e-98 362.1 242 76.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.0e-97 361.3 369 62.1
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.0e-97 361.3 253 73.5
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.0e-97 361.3 370 60.3
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.6e-97 358.6 370 62.2
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.7e-97 358.2 370 61.9
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.5e-96 357.5 253 70.8
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.5e-96 357.5 246 75.6
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.6e-96 355.5 255 74.9
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.1e-95 351.7 253 74.7
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 5.3e-94 349.0 256 71.1
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 9.0e-94 348.2 256 71.1
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 4.5e-93 345.9 256 73.8
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 7.6e-93 345.1 250 72.8
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.2e-92 343.6 258 72.1
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 6.4e-92 342.0 251 70.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 4.2e-91 339.3 250 72.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 4.2e-91 339.3 368 55.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 4.2e-91 339.3 247 72.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.4e-91 339.0 368 66.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.3e-91 338.2 251 72.1
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 7.9e-90 335.1 248 71.0
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 3.0e-89 333.2 370 64.3
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 3.9e-89 332.8 369 65.3
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 5.1e-89 332.4 368 58.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 6.7e-89 332.0 216 79.2
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 4.3e-88 329.3 249 71.5
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 9.6e-88 328.2 249 72.3
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.1e-87 327.0 253 70.8
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.7e-87 326.2 255 69.0
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.2e-87 325.5 369 59.6
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 4.0e-86 322.8 370 54.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.4e-85 319.7 369 60.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.7e-84 317.4 215 79.5
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 4.9e-84 315.8 257 70.0
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.1e-83 314.7 245 68.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.5e-83 313.5 245 67.3
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 6.0e-82 308.9 214 78.5
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 2.8e-79 300.1 241 66.4
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 4.0e-78 296.2 249 64.3
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 9.0e-78 295.0 218 74.8
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.5e-77 294.3 259 62.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 2.6e-77 293.5 223 71.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.4e-77 293.1 242 66.9
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.7e-76 290.8 229 72.1
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 8.4e-76 288.5 306 55.2
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.6e-74 284.3 256 61.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.5e-74 283.1 238 64.3
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.1e-73 279.3 248 61.3
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 6.7e-73 278.9 203 75.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.1e-72 278.1 249 59.8
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.2e-71 273.9 371 48.2
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.5e-69 267.7 189 77.2
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.5e-69 267.7 215 73.0
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.0e-69 267.3 260 58.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.6e-69 266.9 261 58.2
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.7e-68 264.2 241 62.2
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.5e-67 259.2 259 59.5
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.5e-67 259.2 250 61.2
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.0e-64 250.8 263 58.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 7.4e-64 248.8 264 57.2
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.2e-63 247.3 245 60.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 4.8e-63 246.1 255 56.1
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 8.2e-63 245.4 257 57.6
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 8.2e-63 245.4 257 57.6
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 3.8e-60 236.5 260 56.5
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 3.8e-60 236.5 260 56.5
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 8.5e-60 235.3 260 56.5
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.9e-57 226.5 254 55.5
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 6.7e-49 199.1 262 43.9
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-48 197.6 139 71.2
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.3e-41 174.1 132 74.2
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.2e-41 172.9 102 86.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.7e-39 167.9 218 51.4
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 3.8e-36 156.8 194 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.3e-28 131.7 143 48.3
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.7e-28 131.3 138 44.2
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.6e-26 124.8 108 63.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.0e-25 122.1 214 42.5
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.2e-24 118.6 132 43.2
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.9e-21 106.3 121 44.6
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.0e-20 105.5 155 39.4
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.6e-19 99.8 120 43.3
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 5.6e-19 99.8 126 40.5
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 9.5e-19 99.0 114 62.3
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 3.4e-16 90.5 159 59.1
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 7.0e-14 82.8 152 43.4
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.7e-12 78.2 40 87.5
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 8.6e-12 75.9 154 63.0
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-11 75.5 54 66.7
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 1.1e-11 75.5 34 91.2
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.1e-11 75.5 41 80.5
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.8e-09 66.2 100 50.0
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.8e-08 63.2 36 77.8
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.1e-06 56.2 114 34.2


User provided reference genes

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