Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 9.0e-20 99.4 53 100.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.3e-15 85.5 52 90.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.3e-15 85.5 52 90.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.3e-15 85.5 52 90.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.0e-15 84.3 52 88.5
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 3.0e-15 84.3 52 88.5
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.0e-15 84.3 52 88.5
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.0e-15 84.3 52 88.5
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 3.9e-15 84.0 52 86.5
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 5.1e-15 83.6 52 86.5
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 5.1e-15 83.6 52 86.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 5.1e-15 83.6 52 86.5
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 5.1e-15 83.6 52 86.5
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 5.1e-15 83.6 52 86.5
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 88.5
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 88.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 6.7e-15 83.2 52 86.5
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 8.7e-15 82.8 51 88.2
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 8.7e-15 82.8 52 84.6
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-14 82.4 51 86.3
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.5e-14 82.0 52 84.6
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.5e-14 81.3 52 84.6
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.5e-14 81.3 52 86.5
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.5e-14 81.3 52 84.6
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 2.5e-14 81.3 52 86.5
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 3.3e-14 80.9 52 82.7
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 3.3e-14 80.9 52 84.6
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 84.6
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 4.3e-14 80.5 52 82.7
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 5.6e-14 80.1 51 84.3
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 5.6e-14 80.1 52 80.8
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.6e-14 79.3 52 82.7
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 9.6e-14 79.3 52 78.8
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 9.6e-14 79.3 52 78.8
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.6e-13 78.6 52 80.8
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 3.7e-13 77.4 52 82.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.7e-13 77.4 52 82.7
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.7e-13 77.4 52 82.7
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 3.7e-13 77.4 53 83.0
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 4.8e-13 77.0 52 82.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.2e-13 76.6 46 89.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 6.2e-13 76.6 45 91.1
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 6.2e-13 76.6 46 89.1
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.1e-13 76.3 45 88.9
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 8.1e-13 76.3 52 80.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-12 75.9 53 79.2
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-12 75.9 53 79.2
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.4e-12 75.5 52 78.8
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.4e-12 75.5 46 87.0
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.4e-12 75.5 46 87.0
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.4e-12 75.5 50 80.0
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 3.1e-12 74.3 46 84.8
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.0e-12 73.9 52 78.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 5.3e-12 73.6 46 87.0
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 6.9e-12 73.2 48 81.2
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.9e-12 73.2 52 78.8
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 8.4e-10 66.2 52 73.1
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 6.0e-08 60.1 41 75.6
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.0e-07 57.8 52 67.3
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 3.0e-07 57.8 47 74.5


User provided reference genes

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