Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2546.9 1285 100.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2439.5 1301 95.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2435.2 1301 95.0
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2417.9 1285 94.7
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2341.6 1285 91.1
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2322.4 1286 89.7
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2316.6 1287 89.7
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2314.3 1286 89.1
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2311.6 1286 89.1
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2310.0 1286 88.9
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2305.4 1286 89.5
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2295.4 1287 88.6
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2292.3 1287 89.0
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2286.9 1287 88.6
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2286.1 1285 88.2
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2282.7 1301 87.3
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2282.3 1287 87.8
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2277.3 1286 87.8
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2276.1 1285 87.9
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2272.7 1286 88.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2262.3 1288 87.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2260.7 1285 87.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2255.7 1298 86.6
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2247.6 1285 86.7
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2241.1 1292 86.5
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2232.2 1287 85.8
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2223.7 1288 86.7
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2222.6 1288 87.0
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2216.0 1288 86.4
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2214.9 1292 86.1
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2214.9 1288 86.5
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2209.9 1294 86.0
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2204.1 1325 84.5
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2203.7 1294 85.8
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2198.7 1286 85.6
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2197.9 1285 84.7
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2197.5 1285 84.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2197.2 1285 84.6
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2193.7 1286 84.8
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2192.9 1288 84.4
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2191.4 1285 84.4
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1285 85.0
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2188.3 1288 85.4
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2183.3 1289 84.2
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2181.8 1294 83.7
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1295 84.3
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2176.0 1288 84.1
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2175.6 1546 75.4
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2173.7 1288 83.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2166.3 1288 83.3
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2165.6 1297 83.1
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2164.4 1300 83.2
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2158.3 1287 82.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1307 83.9
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2154.8 1288 83.1
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2151.3 1285 83.0
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2151.3 1288 82.8
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2149.4 1293 84.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2149.4 1287 83.9
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2147.1 1311 83.4
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2147.1 1288 83.2
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2145.2 1289 83.8
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2135.5 1286 82.1
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2133.6 1287 82.1
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2133.2 1298 82.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2131.7 1288 82.8
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2127.4 1295 82.2
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2126.7 1286 81.8
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2093.5 1287 81.2
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2091.2 1298 80.8
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2054.6 1213 83.2
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2043.1 1409 75.1
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1993.0 1174 83.6
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1991.9 1221 80.3
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1972.2 1288 78.4
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1956.4 1290 75.6
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1902.5 1289 73.5
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1786.9 1315 71.3
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1684.1 961 87.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1666.7 939 86.4
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1645.6 955 86.8
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1599.7 1069 77.5
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1584.3 907 85.0
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1562.4 936 81.7
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1552.3 914 84.2
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1543.1 1212 65.8
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1523.8 1289 58.8
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1521.1 910 82.1
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1515.0 909 82.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1506.9 1328 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1502.3 1291 58.8
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1492.6 1182 65.7
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1484.9 837 86.6
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1473.8 1287 56.8
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1458.0 911 78.7
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1392.9 955 73.7
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1341.3 1307 53.1
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1285.0 916 68.7
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1162.5 687 85.2
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 3.8e-257 892.5 827 58.8
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.2e-255 887.5 803 59.4
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.1e-243 847.8 476 89.1
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 9.9e-213 745.0 499 77.0
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 2.1e-210 737.3 451 83.6
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 5.8e-205 719.2 550 68.5
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 4.2e-179 633.3 347 94.2
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.5e-176 624.0 420 73.1
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 5.7e-176 622.9 347 92.2
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.2e-170 605.1 347 89.6
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 4.6e-170 603.2 347 89.9
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 6.3e-167 592.8 452 67.3
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 7.7e-165 585.9 347 86.5
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 9.4e-163 578.9 347 87.0
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 9.7e-160 568.9 335 83.0
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 2.0e-157 561.2 347 84.7
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.1e-155 555.4 381 72.2
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.1e-150 538.9 302 86.4
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.6e-149 535.0 635 44.4
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.7e-145 519.6 393 73.0
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 2.9e-140 504.2 274 93.4
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.7e-132 478.4 261 92.0
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 3.7e-127 460.7 410 60.7
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.0e-122 443.0 305 71.1
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 1.3e-119 435.6 274 83.9
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 7.0e-118 429.9 243 85.6
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 7.0e-110 403.3 347 63.1
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 5.8e-104 383.6 300 73.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.2e-102 377.9 260 77.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 9.3e-86 323.2 264 61.7
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.8e-76 292.4 166 83.7
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 3.8e-71 274.6 465 34.2
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 3.5e-69 268.1 154 90.9
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 2.5e-59 235.3 134 88.1
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.8e-58 231.9 426 37.8
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 3.7e-58 231.5 133 83.5
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 5.3e-57 227.6 142 77.5
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 1.3e-55 223.0 127 85.0
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 7.9e-53 213.8 130 85.4
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 7.4e-51 207.2 119 82.4
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.3e-41 174.5 127 64.6
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 9.1e-41 173.7 161 54.0
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 1.5e-40 172.9 123 73.2
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.7e-39 169.5 98 81.6
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.1e-38 166.8 98 80.6
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 2.0e-35 156.0 123 67.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.7e-35 154.5 127 69.3
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.7e-34 151.8 113 64.6
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.5e-30 139.8 95 63.2
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-28 132.5 75 81.3
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.3e-28 132.5 75 80.0
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.4e-27 128.3 85 69.4
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 3.1e-25 122.1 73 75.3
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-23 116.3 130 53.1
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 3.8e-23 115.2 73 76.7
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 4.5e-16 91.7 114 50.9
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.8e-15 88.6 54 77.8
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 6.3e-10 71.2 142 36.6
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 3.1e-09 68.9 77 53.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.9e-08 64.7 34 82.4


User provided reference genes

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