Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 0.0e+00 1406.7 714 100.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 0.0e+00 1280.0 714 91.3
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 0.0e+00 1182.2 715 84.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.8e-256 887.5 727 64.2
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.7e-244 849.0 730 60.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.0e-244 847.8 726 62.9
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.9e-242 842.8 720 62.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.6e-242 841.3 723 61.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 9.6e-242 840.5 731 60.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.9e-238 828.9 718 62.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 4.2e-237 825.1 737 61.5
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 5.6e-234 814.7 730 58.9
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 8.1e-233 810.8 730 58.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.4e-232 810.1 723 59.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.8e-230 802.0 730 59.0
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.9e-229 799.7 719 59.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-227 793.1 726 58.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.0e-227 792.3 721 58.1
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 4.3e-226 788.5 720 58.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.1e-224 783.9 719 60.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.4e-224 783.5 716 57.4
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.4e-224 782.7 731 58.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 9.0e-224 780.8 726 58.0
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.5e-223 778.5 719 60.2
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.8e-223 778.1 719 60.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.7e-222 776.5 726 57.4
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.7e-222 776.5 719 59.4
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.4e-221 773.5 720 59.0
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.9e-221 773.1 721 60.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.2e-221 772.3 734 56.4
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 5.5e-221 771.5 724 58.0
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.6e-220 770.0 732 57.1
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.7e-220 769.2 719 60.1
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.5e-220 768.8 716 58.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.5e-220 768.8 735 56.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.5e-218 763.5 724 56.9
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.9e-218 763.1 721 57.3
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.5e-218 762.7 718 59.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.8e-217 759.2 718 57.1
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 6.3e-217 758.1 721 57.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.4e-216 756.9 724 57.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.3e-214 750.4 723 56.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 3.8e-214 748.8 718 56.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 5.0e-214 748.4 734 56.3
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 7.9e-212 741.1 717 56.9
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.8e-211 740.0 637 62.0
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.0e-211 739.2 715 54.4
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.0e-210 736.5 714 54.1
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.5e-210 736.1 724 55.8
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.3e-209 733.8 722 55.1
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.7e-209 732.3 719 55.2
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.2e-207 727.2 760 51.7
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.0e-207 726.5 757 53.9
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.7e-204 716.1 712 53.5
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.4e-203 713.8 637 61.2
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.4e-203 713.8 723 53.8
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.0e-203 712.6 724 53.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.1e-203 711.8 716 54.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.1e-200 702.6 740 52.4
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 7.0e-200 701.4 722 53.0
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.5e-199 698.7 716 54.2
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.2e-198 696.4 673 55.1
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 5.0e-198 695.3 738 52.4
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.5e-198 694.5 739 51.8
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 5.5e-197 691.8 713 53.7
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.2e-196 690.6 714 53.2
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.7e-196 688.7 716 53.2
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.1e-196 688.3 731 53.6
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 2.6e-194 682.9 728 51.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.7e-193 680.2 736 51.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 2.2e-193 679.9 729 52.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.1e-192 676.0 705 54.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 3.1e-192 676.0 717 53.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.6e-191 672.9 731 51.6
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.5e-191 672.5 716 52.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.3e-190 670.6 730 51.5
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.9e-189 666.8 754 50.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 4.2e-189 665.6 766 49.6
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 4.2e-189 665.6 730 51.1
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 5.5e-189 665.2 724 51.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.6e-188 663.7 724 50.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-188 663.3 727 51.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 4.7e-188 662.1 730 51.2
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.7e-188 662.1 736 51.4
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-187 660.2 724 51.0
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.5e-186 657.1 725 51.0
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.0e-186 656.8 733 50.9
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.0e-186 656.8 729 50.3
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.6e-186 656.4 736 51.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.3e-185 654.1 745 50.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.7e-183 646.4 736 50.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.7e-183 644.8 719 48.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.2e-182 643.3 638 56.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.8e-182 642.5 727 49.7
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.1e-181 641.0 628 56.4
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.5e-181 640.6 727 49.5
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.5e-181 639.8 712 48.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.8e-179 633.6 740 50.1
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.4e-176 624.0 601 57.1
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 4.5e-175 619.0 637 52.0
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 8.6e-174 614.8 635 52.0
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 4.7e-172 609.0 676 49.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 8.9e-171 604.7 711 48.4
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.5e-170 604.0 721 47.3
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.6e-170 603.2 723 47.6
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 6.3e-169 598.6 679 47.6
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.4e-168 596.7 639 52.7
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.5e-165 586.6 807 44.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.7e-161 573.9 716 45.5
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.2e-159 567.8 541 57.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.9e-152 543.9 783 42.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 4.1e-152 542.7 715 44.8
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.3e-147 526.9 685 45.1
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 4.9e-145 519.2 663 44.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.4e-138 496.1 530 51.9
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.6e-127 461.1 819 37.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 6.9e-123 445.7 739 39.6
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.8e-121 439.9 718 39.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-119 434.5 766 38.6
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-116 424.9 765 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 5.7e-93 346.3 482 42.3
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.2e-88 330.5 880 31.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.8e-84 317.4 522 39.3
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 9.1e-67 259.2 172 78.5
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-66 258.8 467 36.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 4.5e-66 256.9 136 93.4
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.9e-64 251.5 677 29.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.7e-63 247.7 443 36.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.0e-50 204.9 213 51.6
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.0e-46 190.7 225 45.3
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.4e-45 187.2 127 69.3
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.3e-40 170.6 209 45.9
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 6.2e-39 166.8 311 35.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.1e-38 164.5 135 56.3
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.6e-34 152.1 98 75.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.3e-33 148.3 95 72.6
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.3e-32 144.4 95 69.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.4e-29 134.4 150 48.7
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.1e-18 98.6 255 33.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.7e-17 95.5 94 48.9
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.4e-14 85.9 438 25.3
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 2.4e-14 85.1 94 46.8
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.5e-13 82.4 159 35.8
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.7e-10 71.6 166 34.9
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 1.9e-08 65.5 225 31.1
Pp3c16_15110 Physcomitrium patens HOM05D001439 ORTHO05D002726 1.3e-07 62.8 116 31.0
Pp3c16_15118 Physcomitrium patens HOM05D001439 ORTHO05D002726 1.3e-07 62.8 116 31.0
ATR0721G002 Amborella trichopoda HOM05D001312 ORTHO05D001832 2.8e-07 61.6 245 27.8
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 8.1e-07 60.1 146 30.1
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 1.4e-06 59.3 190 26.8
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.8e-06 58.9 51 52.9
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 3.1e-06 58.2 174 29.9
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 5.3e-06 57.4 159 31.4
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 6.9e-06 57.0 221 28.1
PGR119G2014 Punica granatum HOM05D001312 ORTHO05D001832 6.9e-06 57.0 183 28.4
Ah.06g194370 Amaranthus hybridus HOM05D001312 ORTHO05D001832 9.0e-06 56.6 188 28.2
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 9.0e-06 56.6 164 31.1
TPR.G32362 Trifolium pratense HOM05D001312 ORTHO05D001832 9.0e-06 56.6 152 34.2


User provided reference genes

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