Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 0.0e+00 1107.0 548 100.0
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 5.9e-308 1060.1 561 93.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.0e-307 1059.3 561 93.9
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 7.0e-285 983.4 512 95.3
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.0e-284 981.9 548 88.7
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.6e-283 976.9 512 94.9
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 5.2e-272 940.6 551 85.8
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.7e-267 925.6 548 82.8
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.0e-267 924.9 550 82.7
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 9.5e-266 919.8 550 82.9
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.2e-265 919.5 551 82.2
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.1e-265 918.7 552 82.6
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 6.2e-265 917.1 550 82.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 5.8e-263 910.6 552 81.3
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 6.4e-262 907.1 548 81.6
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 6.4e-262 907.1 556 80.4
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 6.9e-256 887.1 549 80.3
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 5.8e-255 884.0 554 79.8
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.6e-255 883.6 554 79.8
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.7e-254 882.5 555 79.8
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 5.4e-253 877.5 514 84.2
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.3e-251 872.8 512 83.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 3.3e-250 868.2 554 76.4
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 4.3e-250 867.8 554 76.5
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 9.6e-250 866.7 552 77.9
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 6.2e-249 864.0 539 79.6
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 6.2e-249 864.0 554 76.4
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 4.0e-248 861.3 511 82.4
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 4.5e-247 857.8 554 76.7
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-246 856.3 560 76.2
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.9e-246 855.1 511 81.8
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 8.4e-246 853.6 557 75.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.4e-245 852.0 511 81.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.6e-244 849.4 511 81.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.6e-244 849.4 511 81.4
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.6e-244 847.8 516 81.0
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.3e-243 845.5 559 75.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.3e-243 845.5 549 77.4
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.1e-242 843.2 549 77.0
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 3.3e-242 841.6 550 76.5
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.1e-241 839.0 537 78.8
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.8e-241 838.6 554 73.6
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 6.2e-241 837.4 559 74.8
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 8.1e-241 837.0 549 76.9
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 3.1e-240 835.1 554 74.5
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 6.9e-240 833.9 549 76.3
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.2e-239 833.2 516 78.9
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-239 833.2 550 76.4
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.6e-239 832.0 518 79.2
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.4e-239 831.6 549 76.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 5.8e-239 830.9 549 76.1
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-238 829.7 550 76.4
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.7e-238 829.3 516 79.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.4e-238 827.4 554 74.4
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 8.4e-238 827.0 549 76.0
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 8.4e-238 827.0 499 81.4
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.9e-237 825.9 524 77.9
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 2.5e-237 825.5 499 80.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 5.5e-237 824.3 530 77.4
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 7.1e-237 823.9 513 79.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.5e-236 821.6 544 75.0
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.9e-235 818.1 537 76.9
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 3.3e-234 815.1 549 75.0
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 5.7e-234 814.3 550 74.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.3e-233 813.1 549 73.6
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.6e-233 812.8 506 79.1
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 8.2e-233 810.4 526 76.8
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-231 806.6 549 73.6
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.0e-230 803.5 560 70.5
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.3e-230 803.1 545 73.8
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.1e-229 800.0 545 73.0
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 6.1e-228 794.3 541 72.8
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-227 792.7 549 73.6
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.0e-227 792.0 551 73.1
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 6.7e-227 790.8 550 72.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 5.7e-226 787.7 519 75.0
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 5.7e-226 787.7 519 74.8
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.3e-225 786.6 549 72.7
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 3.7e-225 785.0 545 72.5
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.7e-225 785.0 549 72.5
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.4e-224 783.1 549 72.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 3.1e-224 781.9 543 72.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 4.1e-224 781.6 518 74.5
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 6.9e-224 780.8 519 74.6
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 9.0e-224 780.4 548 71.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.5e-223 779.6 543 71.3
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-223 779.2 469 78.7
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.3e-222 776.5 487 78.9
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 6.5e-222 774.2 518 74.9
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 8.5e-222 773.9 548 70.8
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-221 773.5 521 75.6
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 7.2e-221 770.8 561 68.6
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.6e-220 769.6 548 70.8
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-220 769.2 554 70.9
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.0e-219 766.9 639 63.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 3.3e-218 761.9 486 77.8
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.4e-218 760.8 546 69.8
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 7.4e-218 760.8 523 72.3
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.7e-217 759.6 548 70.3
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.8e-217 758.8 545 69.7
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.8e-217 758.8 545 69.7
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 5.3e-216 754.6 538 71.0
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 9.1e-216 753.8 546 69.4
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.2e-215 753.4 546 71.2
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.5e-215 753.1 548 69.5
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.7e-215 750.7 559 67.6
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.0e-214 750.4 514 74.5
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 2.9e-214 748.8 533 70.0
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.0e-214 748.0 530 70.6
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.5e-213 745.7 559 66.9
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 7.2e-213 744.2 532 70.3
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 7.2e-213 744.2 557 70.7
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.9e-212 740.7 543 70.2
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-211 740.3 462 77.9
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.3e-206 723.4 408 84.8
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 3.3e-202 708.8 506 71.3
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 7.0e-200 701.0 534 68.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.2e-198 696.0 563 65.7
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 6.3e-193 677.9 531 65.0
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 5.9e-191 671.4 562 61.6
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.2e-189 664.5 402 78.6
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 6.1e-188 661.4 532 64.3
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 8.6e-174 614.4 500 63.2
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.9e-173 613.2 524 62.4
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 2.8e-172 609.4 551 58.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.7e-169 600.1 501 63.5
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.9e-168 596.7 435 71.5
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.1e-168 595.5 549 60.5
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 8.9e-163 577.8 549 56.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 9.8e-162 574.3 373 77.2
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 4.4e-154 548.9 426 68.3
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.7e-151 539.7 533 54.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-147 527.3 354 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 7.8e-143 511.5 559 50.8
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.3e-141 505.8 555 49.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.4e-138 496.1 467 57.2
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 3.2e-136 489.6 375 68.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 1.4e-131 474.2 540 49.4
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.3e-125 452.6 389 64.0
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.6e-103 380.9 306 59.5
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 3.0e-102 376.7 440 52.5
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.2e-100 370.5 535 41.1
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 6.5e-97 359.0 503 43.3
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.4e-75 287.3 164 88.4
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.1e-67 260.0 333 48.6
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 2.9e-60 237.3 460 33.0
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.8e-59 234.6 236 54.7
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.0e-57 228.8 147 79.6
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.5e-56 224.9 162 77.2
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.3e-49 201.8 464 31.5
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 8.6e-49 199.1 421 32.5
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.2e-45 188.7 111 83.8
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 7.5e-45 186.0 91 94.5
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 8.3e-44 182.6 110 75.5
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.4e-43 181.0 376 35.9
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 6.6e-41 172.9 164 55.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.3e-40 170.2 407 31.4
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.8e-38 164.9 118 66.9
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.7e-36 158.3 155 58.1
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 8.1e-23 112.8 86 60.5
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.0e-21 108.2 160 41.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.0e-14 84.0 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.9e-12 77.8 40 87.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 8.4e-12 76.3 48 70.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 3.9e-09 67.4 98 41.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 6.7e-09 66.6 33 81.8
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 8.7e-09 66.2 293 24.6
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-08 65.9 32 90.6
AUR62018095 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.5e-08 64.7 306 22.5
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.6e-07 62.0 190 26.3
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 1.4e-06 58.9 190 26.3
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 1.8e-06 58.5 354 24.0
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 2.4e-06 58.2 90 38.9
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 2.4e-06 58.2 90 38.9
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 2.4e-06 58.2 187 25.1
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 3.1e-06 57.8 247 25.1
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 3.1e-06 57.8 247 25.5
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 3.1e-06 57.8 247 25.1
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 3.1e-06 57.8 57 54.4
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 4.0e-06 57.4 247 25.5
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 4.0e-06 57.4 247 25.5
AT5G56130 Arabidopsis thaliana HOM05D005961 ORTHO05D007391 5.3e-06 57.0 89 33.7
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 6.9e-06 56.6 349 20.9
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 6.9e-06 56.6 187 25.1
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 6.9e-06 56.6 187 24.1
AL8G31760 Arabidopsis lyrata HOM05D005961 ORTHO05D007391 9.0e-06 56.2 82 35.4
Carub.0008s1645 Capsella rubella HOM05D005961 ORTHO05D007391 9.0e-06 56.2 82 35.4


User provided reference genes

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