Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 5.2e-235 817.4 429 100.0
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-219 766.1 448 86.2
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 9.0e-219 763.5 448 86.2
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 2.2e-156 556.2 409 68.0
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.1e-155 553.9 417 66.2
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.1e-155 553.9 417 65.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.3e-155 551.6 417 65.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 3.0e-150 535.8 412 65.0
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 9.8e-149 530.8 393 70.2
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 7.0e-147 524.6 396 65.2
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 3.5e-146 522.3 384 68.0
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.5e-144 516.2 415 62.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 5.5e-144 515.0 436 60.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 9.5e-144 514.2 436 60.6
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.8e-143 512.7 355 72.4
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.4e-142 510.4 429 64.1
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.0e-142 509.2 400 64.0
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 4.9e-140 501.9 383 65.0
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 4.5e-138 495.4 399 61.9
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.1e-136 490.7 415 61.0
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.9e-136 490.0 388 62.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 5.6e-136 488.4 403 62.8
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 5.2e-134 481.9 397 63.5
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 6.8e-134 481.5 407 66.3
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 7.5e-133 478.0 426 59.4
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 9.8e-133 477.6 387 61.2
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.9e-131 473.4 355 66.5
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 5.4e-131 471.9 355 66.5
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 8.6e-129 464.5 425 60.5
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.3e-128 462.6 329 69.6
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 3.6e-127 459.1 399 58.1
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 5.2e-126 455.3 364 61.8
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.3e-124 450.7 390 57.4
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.3e-124 450.7 414 61.6
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.2e-124 449.9 383 61.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 3.7e-124 449.1 285 77.2
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.9e-124 448.7 384 57.6
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 2.4e-123 446.4 387 63.0
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 7.0e-123 444.9 387 58.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 6.0e-122 441.8 397 56.9
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.0e-121 441.0 369 59.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 3.0e-121 439.5 369 59.6
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 2.5e-120 436.4 384 57.3
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.3e-120 436.0 354 60.5
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.8e-119 433.0 346 61.8
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.8e-119 433.0 285 73.7
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.4e-118 430.6 355 61.1
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.8e-118 430.3 346 61.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 6.8e-118 428.3 411 53.8
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 6.8e-118 428.3 391 61.1
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 8.9e-118 427.9 448 52.2
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 3.4e-117 426.0 411 52.1
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 5.8e-117 425.2 411 52.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 7.1e-115 418.3 409 51.6
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 9.2e-115 417.9 411 51.3
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.6e-114 417.2 367 57.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 4.6e-114 415.6 327 61.5
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 6.0e-114 415.2 414 57.0
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.5e-112 410.6 411 52.6
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.5e-112 410.6 430 51.6
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 3.3e-112 409.5 334 60.8
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 4.3e-112 409.1 345 59.1
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 5.6e-112 408.7 315 63.5
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 9.5e-112 407.9 335 60.6
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.2e-111 407.5 411 51.3
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.6e-111 407.1 411 51.6
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 2.1e-111 406.8 390 53.3
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 4.7e-111 405.6 411 51.1
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 8.1e-111 404.8 388 53.4
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.4e-110 404.1 411 51.1
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 2.6e-109 399.8 286 67.1
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 2.6e-109 399.8 387 51.9
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.6e-109 399.8 431 55.5
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 2.6e-109 399.8 335 59.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 3.4e-109 399.4 324 60.8
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 4.4e-109 399.1 348 56.6
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 9.9e-109 397.9 391 51.9
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.9e-108 396.4 372 61.3
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.8e-108 396.0 329 62.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 2.4e-107 393.3 314 63.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.1e-104 384.4 349 56.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.5e-101 374.0 334 56.3
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 3.4e-101 372.9 411 47.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.7e-100 370.5 246 72.4
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.9e-100 369.8 328 59.5
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 5.4e-99 365.5 391 54.7
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 3.5e-98 362.8 355 53.5
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 6.0e-98 362.1 353 54.7
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.6e-95 354.0 246 67.5
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 3.4e-93 346.3 389 48.3
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.3e-92 344.4 355 56.3
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.2e-90 337.8 340 51.2
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 4.6e-90 335.9 223 71.3
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.5e-88 330.1 415 47.7
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 9.6e-88 328.2 334 50.0
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 5.5e-83 312.4 225 66.2
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.0e-81 308.1 304 53.0
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 9.6e-80 301.6 285 53.7
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.1e-78 298.1 248 60.1
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 2.4e-78 297.0 289 52.2
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 9.0e-78 295.0 389 46.8
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.4e-70 271.2 205 62.0
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 5.9e-53 212.6 183 60.7
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.2e-47 194.1 277 44.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 3.7e-47 193.4 153 60.8
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-41 174.9 176 54.5
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 5.2e-41 172.9 113 69.9
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.8e-39 167.2 199 46.2
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 5.0e-36 156.4 173 46.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.2e-34 151.8 198 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 1.5e-24 118.2 166 39.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 6.2e-18 96.3 252 29.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.3e-17 94.4 180 33.9
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 7.8e-13 79.3 190 34.2
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 7.8e-13 79.3 190 33.7
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.3e-12 78.6 193 31.6
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 2.1e-10 71.2 188 30.3
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 3.1e-09 67.4 179 29.6
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.2e-08 65.5 198 27.3
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.0e-08 64.7 193 28.0
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.0e-08 64.7 193 28.0
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.0e-08 64.7 197 27.9
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 5.8e-08 63.2 197 25.4
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.3e-07 62.0 45 57.8
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.7e-07 61.6 199 28.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.7e-07 61.6 185 28.1
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 2.4e-06 57.8 115 27.8
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 2.4e-06 57.8 163 28.8
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.4e-06 57.8 199 24.1


User provided reference genes

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