Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.8e-243 845.5 420 100.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 8.7e-243 843.2 420 99.8
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 4.8e-201 704.5 431 83.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.7e-199 698.7 418 81.6
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.6e-191 672.9 418 78.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.2e-189 665.2 419 76.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 6.1e-188 661.0 417 77.7
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.0e-187 658.7 419 75.7
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 3.0e-187 658.7 419 75.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-185 653.3 419 76.8
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.6e-183 646.4 419 74.2
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.9e-183 644.4 419 75.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 5.0e-182 641.3 419 74.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 7.3e-181 637.5 417 74.6
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.1e-180 634.4 420 74.0
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 6.1e-180 634.4 420 73.8
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.0e-179 633.6 441 72.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.4e-179 633.3 417 75.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 6.8e-179 630.9 419 73.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.8e-179 630.9 416 74.3
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 8.9e-179 630.6 420 72.4
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.4e-178 628.2 420 73.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 9.8e-178 627.1 422 73.0
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-177 626.7 422 72.5
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.7e-177 626.3 418 73.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.7e-177 626.3 417 72.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.2e-177 625.9 429 72.5
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-177 625.9 418 73.2
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-176 623.6 418 73.2
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.2e-176 622.1 417 72.7
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 7.0e-176 620.9 419 72.6
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 5.9e-175 617.8 417 72.7
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.3e-174 616.7 418 71.3
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 3.0e-174 615.5 417 71.2
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 6.6e-174 614.4 419 71.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.1e-173 613.6 419 71.8
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 5.6e-173 611.3 419 70.4
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.6e-172 608.6 418 71.5
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.7e-172 608.2 445 68.3
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 4.7e-172 608.2 420 70.5
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.0e-171 607.1 419 69.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.4e-171 606.7 418 71.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-171 606.7 420 70.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.3e-171 605.9 419 69.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 5.8e-170 601.3 416 68.8
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 5.8e-170 601.3 436 68.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.9e-169 599.0 421 69.6
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.7e-169 598.6 419 68.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.4e-169 597.8 417 70.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 6.4e-169 597.8 423 69.7
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.3e-169 597.4 419 69.2
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 4.1e-168 595.1 417 69.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-167 593.6 419 68.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.2e-167 593.6 417 68.1
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.0e-167 592.8 420 68.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.1e-165 587.0 417 65.7
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.9e-165 586.3 417 68.8
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.3e-165 585.1 432 66.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 5.6e-165 584.7 419 70.6
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 6.2e-164 581.3 420 66.7
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.1e-163 578.9 456 62.9
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 4.0e-163 578.6 418 67.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.8e-163 577.8 417 68.8
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 8.9e-163 577.4 416 66.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.2e-160 568.9 419 66.8
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.1e-160 567.8 420 66.2
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.2e-159 567.0 418 66.5
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-159 567.0 419 65.4
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.1e-159 566.2 420 67.6
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.6e-159 565.1 416 66.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 4.6e-159 565.1 419 64.9
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 7.8e-159 564.3 418 67.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 6.2e-156 554.7 515 56.7
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 5.8e-154 548.1 422 61.8
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.9e-153 545.8 421 64.6
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.1e-152 542.0 420 64.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.3e-150 536.2 417 64.0
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 9.6e-149 530.8 417 63.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.1e-148 529.6 421 61.8
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.4e-147 526.2 418 62.7
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-147 525.8 420 61.9
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.8e-146 521.5 417 61.6
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-145 520.4 420 60.5
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-145 520.0 428 60.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.9e-145 518.5 424 59.7
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-144 516.9 434 62.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.3e-144 514.2 420 61.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-142 510.4 417 61.2
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 3.0e-142 509.2 419 63.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-141 506.1 428 58.9
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 3.3e-141 505.8 419 59.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 8.1e-140 501.1 423 59.3
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-139 500.7 400 61.2
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 5.3e-139 498.4 429 61.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 4.5e-138 495.4 394 61.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.9e-137 491.9 394 58.6
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-136 490.7 421 57.0
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.4e-136 490.3 328 73.8
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-132 476.5 423 57.0
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 6.2e-132 474.9 418 58.9
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 6.2e-132 474.9 424 55.2
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-131 472.6 430 54.7
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.0e-130 469.9 323 70.3
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.5e-130 468.8 385 59.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-129 467.2 420 56.4
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-128 463.8 342 66.4
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.6e-127 458.8 289 77.2
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.0e-126 456.1 394 61.9
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.1e-126 455.3 291 75.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-124 450.7 313 70.9
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 9.0e-123 444.5 428 58.2
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.5e-122 442.2 421 54.6
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 2.9e-121 439.5 330 64.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.9e-121 438.7 339 66.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-119 433.7 423 54.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.3e-118 429.9 420 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.0e-118 429.5 439 49.9
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 5.1e-118 428.7 423 54.4
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.5e-117 426.4 421 55.3
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 5.3e-115 418.7 434 49.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.2e-114 417.5 333 61.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.9e-113 412.9 338 58.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 6.5e-113 411.8 339 59.3
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.1e-112 411.0 428 48.4
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.2e-112 409.1 417 51.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.5e-109 400.6 414 53.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.5e-104 383.3 416 51.2
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.5e-88 330.9 576 35.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.2e-88 329.3 275 56.0
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.1e-79 298.9 346 46.5
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.3e-76 291.2 419 41.8
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.7e-74 283.5 171 76.6
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-69 266.2 273 54.6
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.3e-65 253.8 516 33.5
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-60 238.0 196 57.7
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.3e-60 235.3 158 65.2
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.7e-55 219.5 149 63.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.7e-52 211.1 401 35.4
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 8.9e-46 188.7 189 54.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-40 171.0 198 46.5
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-37 160.6 171 45.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.6e-37 160.6 102 72.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.4e-35 154.1 143 57.3
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.1e-30 137.1 78 78.2
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-29 135.2 78 79.5
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-29 135.2 78 79.5
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.6e-29 134.0 81 76.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.6e-29 134.0 78 76.9
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 7.6e-29 132.5 78 78.2
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.1e-26 124.4 76 69.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.8e-26 122.5 78 70.5
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-25 121.3 77 70.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.3e-24 115.9 79 64.6
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-23 113.6 77 68.8
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-20 103.6 123 40.7
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 4.2e-19 100.1 57 75.4
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 4.6e-18 96.7 66 66.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.9e-18 95.9 61 68.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 7.4e-16 89.4 73 63.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 7.4e-16 89.4 73 60.3


User provided reference genes

Program Settings