Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.4e-34 148.3 75 100.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.5e-33 144.1 75 97.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.2e-31 137.5 75 92.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 8.2e-27 123.2 73 79.5
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 78.1
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.8e-24 114.4 73 72.6
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 6.5e-24 113.6 73 75.3
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 6.5e-24 113.6 73 75.3
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.4e-23 112.5 73 74.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 4.2e-23 110.9 73 75.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 5.5e-23 110.5 73 72.6
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 5.5e-23 110.5 73 71.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.2e-23 110.2 73 75.3
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 9.4e-23 109.8 73 72.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 9.4e-23 109.8 73 74.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.4e-23 109.8 73 74.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.6e-22 109.0 73 75.3
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 72.6
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 3.6e-22 107.8 74 78.4
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.7e-22 107.5 73 72.6
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.4e-21 105.9 74 75.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.3e-21 105.1 73 68.5
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.3e-21 105.1 73 68.5
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 5.2e-21 104.0 73 68.5
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 6.7e-21 103.6 73 71.2
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.1e-20 102.8 73 71.2
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.5e-20 102.4 73 68.5
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.5e-20 102.4 73 68.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.0e-20 102.1 73 67.1
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.6e-20 101.7 73 69.9
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.4e-20 100.9 73 68.5
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.4e-20 100.9 74 70.3
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.4e-20 100.1 73 65.8
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.7e-20 99.8 73 69.9
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 9.7e-20 99.8 73 67.1
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-19 99.0 73 68.5
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.7e-19 99.0 73 68.5
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.7e-19 99.0 73 67.1
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.7e-19 97.8 73 64.4
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 4.8e-19 97.4 73 67.1
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.2e-19 96.7 73 67.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 64.4
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.4e-18 95.9 73 61.6
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.4e-18 95.1 77 68.8
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.1e-18 94.7 73 64.4
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.1e-18 94.4 73 61.6
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 7.0e-18 93.6 77 66.2
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 9.1e-18 93.2 73 65.8
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 60.3
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 64.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.0e-17 92.0 77 63.6
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 61 68.9
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 2.6e-17 91.7 73 61.6
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.6e-17 91.7 73 65.8
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.5e-17 91.3 73 57.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.5e-17 91.3 71 63.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 57.5
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 4.5e-17 90.9 74 64.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 63.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.0e-16 89.7 80 57.5
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.0e-16 89.7 73 63.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.0e-16 89.7 74 60.8
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 77 63.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.7e-16 89.0 74 55.4
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.7e-16 89.0 73 58.9
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.2e-16 88.6 73 63.0
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 58 70.7
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.2e-16 88.6 78 55.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.9e-16 88.2 77 59.7
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.9e-16 88.2 77 59.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.9e-16 88.2 73 58.9
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 3.8e-16 87.8 76 61.8
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 69 55.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.0e-16 87.4 73 57.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.5e-16 87.0 77 58.4
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.5e-16 87.0 77 58.4
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.5e-16 87.0 77 59.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 76 56.6
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 77 57.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 77 57.1
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-15 85.9 75 58.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-15 85.9 63 68.3
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.2e-15 84.7 57 70.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.2e-15 84.3 77 55.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 4.2e-15 84.3 77 55.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.2e-15 84.3 77 57.1
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 5.5e-15 84.0 65 66.2
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 59.4
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 9.4e-15 83.2 73 54.8
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 9.4e-15 83.2 77 55.8
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.7e-14 81.6 73 58.9
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.6e-14 81.3 79 54.4
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.7e-14 80.9 76 53.9
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 6.1e-14 80.5 64 57.8
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-14 80.5 64 57.8
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-14 80.5 64 57.8
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-14 80.5 64 57.8
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 6.1e-14 80.5 64 57.8
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.0e-13 79.7 80 51.2
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-13 79.7 64 56.2
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.0e-13 79.7 72 56.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.8e-13 79.0 57 57.9
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-13 78.6 73 50.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 64 56.2
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.0e-13 78.2 68 55.9
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 3.0e-13 78.2 67 55.2
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.0e-13 78.2 58 67.2
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.0e-13 78.2 74 55.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.0e-13 77.8 72 54.2
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.0e-13 77.8 68 55.9
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.0e-13 77.8 68 55.9
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 6.8e-13 77.0 78 50.0
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.8e-13 76.6 68 58.8
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.2e-12 76.3 72 54.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.2e-12 76.3 76 51.3
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.5e-12 75.9 52 61.5
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.5e-12 75.9 77 48.1
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.0e-12 75.5 63 58.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.0e-12 75.5 63 58.7
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.6e-12 75.1 78 53.8
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.4e-12 74.3 56 69.6
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 4.4e-12 74.3 63 58.7
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.4e-12 74.3 77 51.9
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 5.7e-12 73.9 73 50.7
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 7.5e-12 73.6 75 50.7
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 7.5e-12 73.6 65 61.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 7.5e-12 73.6 52 57.7
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 9.7e-12 73.2 75 49.3
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 9.7e-12 73.2 75 49.3
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 9.7e-12 73.2 75 49.3
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 9.7e-12 73.2 75 49.3
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 9.7e-12 73.2 75 49.3
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 9.7e-12 73.2 58 69.0
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-11 72.8 71 47.9
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-11 72.8 76 47.4
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-11 72.4 59 54.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.2e-11 72.0 73 46.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-11 71.6 73 49.3
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 8.3e-11 70.1 78 47.4
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.1e-10 69.7 75 46.7
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-10 69.3 73 47.9
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-10 69.3 57 54.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.8e-10 68.9 72 48.6
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-10 68.9 45 64.4
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 2.4e-10 68.6 45 73.3
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 7.0e-10 67.0 52 48.1
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 7.0e-10 67.0 67 40.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.6e-09 65.9 82 43.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.6e-09 65.9 61 47.5
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.5e-09 64.3 59 52.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.5e-07 58.5 36 72.2


User provided reference genes

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