Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 0.0e+00 1373.6 1076 100.0
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 0.0e+00 1128.2 993 95.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 4.4e-206 722.6 1061 68.2
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 5.4e-204 715.7 1079 69.9
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.2e-203 714.5 1058 67.3
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.4e-198 696.4 1024 71.0
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.9e-197 693.3 1020 71.1
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.4e-196 690.3 1075 67.1
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 7.0e-196 688.7 1075 67.0
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 1.5e-193 681.0 1077 68.5
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.3e-191 673.7 978 70.0
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.2e-190 671.4 1067 65.7
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 9.8e-190 668.3 1070 65.6
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.7e-186 657.5 1043 69.6
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.1e-184 650.6 1071 65.7
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 8.1e-184 648.7 1071 65.9
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.4e-183 647.9 1009 68.4
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.1e-183 646.7 950 71.9
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.2e-182 644.8 1082 66.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.5e-177 627.9 1067 65.5
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.9e-177 627.5 1071 65.1
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.1e-175 620.2 1078 64.7
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 7.1e-172 609.0 1063 63.9
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 3.0e-170 603.6 1071 62.3
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.2e-166 591.7 1061 62.3
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 9.9e-166 588.6 978 68.0
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 5.4e-164 582.8 1061 62.7
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 7.8e-163 578.9 1088 63.4
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.7e-162 577.8 1064 52.9
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 3.4e-158 563.5 919 70.3
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 3.8e-157 560.1 1077 57.3
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 4.6e-155 553.1 1054 62.3
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 4.6e-155 553.1 1061 63.4
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.0e-154 550.4 1082 61.7
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 8.7e-154 548.9 1071 57.1
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.5e-153 547.4 1073 62.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 4.3e-153 546.6 1069 57.2
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 4.8e-152 543.1 1076 59.3
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 1.1e-151 542.0 1067 59.8
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 4.0e-151 540.0 1076 54.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 3.4e-150 537.0 1063 59.5
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 9.9e-150 535.4 1070 62.3
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.7e-149 534.6 1075 61.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 5.1e-146 523.1 1072 60.9
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.5e-142 511.5 1057 60.5
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 3.9e-138 496.9 1082 50.7
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.7e-133 481.5 1059 58.5
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 5.7e-129 466.5 648 63.7
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.5e-126 458.4 751 56.5
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 1.0e-125 455.7 1067 59.2
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 1.3e-125 455.3 1072 57.7
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 5.5e-124 449.9 1058 59.6
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.0e-122 444.1 918 62.1
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 6.7e-122 443.0 1064 58.0
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.8e-120 437.6 1058 57.0
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 1.2e-118 432.2 755 55.1
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.5e-118 431.8 833 62.7
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 2.6e-118 431.0 1072 56.8
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.9e-118 429.9 1070 58.4
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 7.7e-118 429.5 1073 57.2
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.1e-116 425.6 1073 57.8
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 5.5e-116 423.3 679 66.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 8.0e-115 419.5 756 54.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 8.8e-114 416.0 1073 57.0
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 5.7e-113 413.3 977 60.4
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 8.2e-112 409.5 1051 57.9
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 1.8e-111 408.3 678 63.4
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 9.1e-111 406.0 1077 57.2
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 2.0e-110 404.8 1008 45.7
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 4.5e-110 403.7 917 59.9
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 7.7e-110 402.9 927 62.0
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.0e-106 392.5 1106 56.7
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 4.4e-105 387.1 1072 55.5
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 2.9e-101 374.4 743 50.9
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 2.9e-101 374.4 743 50.9
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 6.8e-98 363.2 747 49.5
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.7e-93 348.6 1073 51.2
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 8.0e-91 339.7 1069 55.4
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.2e-90 337.0 733 48.8
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 5.7e-89 333.6 976 54.6
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.1e-87 329.3 754 50.3
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 3.5e-86 324.3 756 50.8
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.6e-78 298.9 1058 42.2
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 4.4e-73 280.8 927 57.6
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 4.3e-68 264.2 333 47.1
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 8.3e-64 250.0 925 57.6
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.2e-54 219.5 481 67.2
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.1e-54 218.8 243 51.0
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 6.2e-51 207.2 239 47.7
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.4e-50 205.3 342 35.4
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 5.8e-41 174.1 580 48.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 5.8e-41 174.1 171 48.0
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 4.3e-36 157.9 730 41.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 4.9e-32 144.4 662 43.1
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.3e-29 135.6 161 48.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 6.7e-29 134.0 450 61.1
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.5e-28 132.9 452 61.3
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 6.9e-26 124.0 447 60.9
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.5e-25 122.9 242 34.7
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 8.4e-24 117.1 412 64.6
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 7.1e-23 114.0 409 64.3
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 8.7e-21 107.1 146 44.5
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.3e-19 103.2 534 51.9
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 2.0e-17 95.9 155 40.6
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.0e-16 93.6 204 30.4
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.3e-11 76.6 95 45.3
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 6.3e-11 74.3 96 39.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.1e-10 72.0 171 26.3
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 3.8e-08 65.1 224 24.1
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.5e-07 62.4 199 27.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 7.2e-07 60.8 196 27.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 7.2e-07 60.8 124 30.6
Nitab4.5_0003261g0020 Nicotiana tabacum HOM05D006842 ORTHO05D008908 9.4e-07 60.5 43 60.5
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 9.4e-07 60.5 177 26.6
SalBow3G1046 Salvia bowleyana HOM05D000162 ORTHO05D000090 9.4e-07 60.5 152 25.7
Hma1.2p1_0149F.1_g066330 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.2e-06 60.1 155 27.1
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.6e-06 59.7 86 37.2
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 1.6e-06 59.7 165 27.3
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 2.7e-06 58.9 142 31.7
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 2.7e-06 58.9 142 31.7
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.7e-06 58.9 76 40.8
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 2.7e-06 58.9 177 26.6
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.7e-06 58.9 182 27.5
SEGI_16454 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 2.7e-06 58.9 247 21.9
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 3.6e-06 58.5 214 23.8
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 4.7e-06 58.2 149 25.5
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.7e-06 58.2 86 38.4
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 6.1e-06 57.8 140 26.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 6.1e-06 57.8 155 27.1
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 6.1e-06 57.8 135 31.1
QL09p052079 Quercus lobata HOM05D000001 ORTHO05D000003 6.1e-06 57.8 171 26.3
QL09p052952 Quercus lobata HOM05D000001 ORTHO05D000003 6.1e-06 57.8 171 26.3
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 7.9e-06 57.4 140 29.3
CiPaw.03G146600 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.9e-06 57.4 148 26.4
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 7.9e-06 57.4 115 28.7
vmacro02777 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 7.9e-06 57.4 178 26.4


User provided reference genes

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