Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.9e-46 188.7 91 100.0
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.2e-42 175.3 88 95.5
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 7.1e-41 170.2 91 84.6
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 6.0e-40 167.2 91 83.5
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.8e-39 165.6 88 85.2
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 1.8e-39 165.6 91 81.3
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.7e-39 163.7 91 79.1
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 6.7e-39 163.7 88 86.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 8.7e-39 163.3 88 81.8
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.1e-38 162.9 90 81.1
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.5e-38 162.5 90 80.0
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.5e-38 161.8 89 79.8
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 78.0
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 3.3e-38 161.4 91 80.2
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 5.6e-38 160.6 93 80.6
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 5.6e-38 160.6 93 80.6
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 5.6e-38 160.6 89 78.7
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 5.6e-38 160.6 91 76.9
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 9.6e-38 159.8 88 80.7
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.3e-37 159.5 91 76.9
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.3e-37 159.5 88 80.7
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.6e-37 159.1 91 80.2
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 2.1e-37 158.7 91 80.2
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.8e-37 158.3 91 78.0
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 3.7e-37 157.9 91 79.1
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.7e-37 157.9 91 80.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 3.7e-37 157.9 91 78.0
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 6.2e-37 157.1 91 80.2
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.4e-36 156.0 90 80.0
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.4e-36 155.2 91 75.8
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.4e-36 155.2 88 78.4
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 4.0e-36 154.5 91 73.6
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.0e-36 154.5 91 74.7
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.0e-36 154.5 91 74.7
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 5.3e-36 154.1 88 76.1
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 6.9e-36 153.7 88 76.1
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 73.6
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 74.7
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 71.4
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.2e-35 152.9 93 77.4
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.2e-35 152.9 91 75.8
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-35 152.5 91 76.9
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-35 152.5 91 76.9
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-35 152.1 87 79.3
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.0e-35 152.1 87 79.3
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.0e-35 152.1 91 75.8
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 2.0e-35 152.1 88 76.1
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.0e-35 152.1 91 72.5
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 2.6e-35 151.8 89 75.3
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.4e-35 151.4 91 71.4
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 3.4e-35 151.4 91 76.9
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 76.9
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 73.6
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 75.8
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 5.8e-35 150.6 91 75.8
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.7e-34 149.1 87 73.6
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 4.9e-34 147.5 90 77.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 4.9e-34 147.5 88 76.1
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 6.4e-34 147.1 91 74.7
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 7.1e-33 143.7 88 71.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 7.1e-33 143.7 90 72.2
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 71.4
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 69.2
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.6e-32 142.5 91 71.4
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.6e-32 142.5 88 72.7
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.1e-32 142.1 91 72.5
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 2.7e-32 141.7 87 73.6
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 6.0e-32 140.6 90 70.0
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 6.0e-32 140.6 91 68.1
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 68.1
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 68.1
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 68.1
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 68.1
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 68.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 7.9e-32 140.2 87 67.8
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.3e-31 139.4 91 70.3
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 2.3e-31 138.7 91 70.3
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.0e-31 138.3 91 68.1
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 68.1
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 65.9
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 8.7e-31 136.7 91 68.1
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.1e-30 136.3 91 67.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.1e-30 136.3 91 68.1
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 68.1
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 68.1
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 68.1
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 68.1
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 1.9e-30 135.6 87 67.8
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.5e-30 135.2 91 69.2
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 5.6e-30 134.0 87 69.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 5.6e-30 134.0 87 67.8
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 7.4e-30 133.7 92 67.4
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 7.4e-30 133.7 89 66.3
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.1e-29 132.1 92 70.7
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 6.2e-29 130.6 87 67.8
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 8.2e-29 130.2 88 67.0
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 67.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 1.1e-28 129.8 88 67.0
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.1e-28 129.8 91 67.0
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 65.9
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-28 128.6 91 64.8
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 2.4e-28 128.6 91 64.8
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 2.4e-28 128.6 87 64.4
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 2.4e-28 128.6 89 66.3
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 5.3e-28 127.5 82 68.3
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 2.0e-27 125.6 89 61.8
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 7.6e-27 123.6 88 63.6
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 64.8
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 63.6
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 63.6
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 63.6
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.7e-26 122.5 90 61.1
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.9e-26 121.7 82 65.9
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.8e-26 121.3 88 63.6
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.9e-26 120.9 85 64.7
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.9e-25 119.0 88 61.4
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.3e-25 116.7 62 80.6
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-24 115.5 88 60.2
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 3.0e-23 111.7 66 74.2
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 5.3e-20 100.9 91 51.6
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 5.9e-19 97.4 88 55.7
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.0e-18 96.7 75 57.3
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.0e-18 96.7 85 51.8
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.6e-16 88.2 59 59.3
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.4e-15 86.3 57 61.4
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.4e-15 86.3 78 52.6
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.3e-15 85.5 62 56.5
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.5e-14 82.8 90 45.6
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.9e-14 82.4 58 62.1
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.3e-13 79.7 57 61.4
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.8e-12 75.9 64 53.1
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 4.1e-12 74.7 85 38.8
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 6.9e-12 73.9 45 71.1
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 5.9e-11 70.9 44 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 7.2e-09 63.9 82 39.0
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.2e-09 63.9 79 41.8
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 7.2e-09 63.9 79 41.8
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 4.7e-08 61.2 71 43.7
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 4.7e-08 61.2 71 43.7
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.1e-08 60.8 89 42.7
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 1.4e-07 59.7 43 60.5
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 1.4e-07 59.7 43 60.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-06 56.6 82 31.7
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 2.0e-06 55.8 80 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 9.7e-06 53.5 70 38.6


User provided reference genes

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