Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 8.7e-184 647.1 398 100.0
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 1.4e-162 576.6 394 87.6
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 1.0e-144 517.3 394 80.2
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 2.4e-141 506.1 394 79.9
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 2.3e-99 366.7 396 55.8
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 3.2e-93 346.3 400 54.8
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 3.5e-92 342.8 396 54.5
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 7.1e-85 318.5 401 50.6
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 1.7e-83 313.9 399 52.4
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 6.6e-83 312.0 384 50.3
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 1.9e-82 310.5 399 52.9
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 3.3e-82 309.7 402 55.5
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 2.1e-81 307.0 393 52.4
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 4.0e-80 302.8 397 52.6
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 2.0e-79 300.4 394 51.0
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 1.3e-78 297.7 415 49.9
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 2.4e-77 293.5 390 51.0
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 9.3e-77 291.6 394 51.0
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 1.7e-75 287.3 404 45.5
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 1.1e-74 284.6 403 50.4
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 7.3e-74 282.0 389 48.1
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 3.6e-73 279.6 404 50.7
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 4.8e-73 279.3 402 51.7
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 6.2e-73 278.9 398 53.8
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 6.2e-73 278.9 398 53.8
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 6.2e-73 278.9 411 50.9
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 8.1e-73 278.5 405 51.9
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 1.8e-72 277.3 393 50.9
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 5.3e-72 275.8 409 50.1
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 2.0e-71 273.9 414 50.0
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.6e-71 273.5 410 48.8
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.8e-71 272.3 410 48.8
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 5.8e-71 272.3 410 49.0
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 1.1e-69 268.1 402 48.0
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 3.2e-69 266.5 390 44.4
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 5.4e-69 265.8 413 48.4
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 3.0e-67 260.0 409 48.7
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 3.9e-67 259.6 397 43.8
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 3.9e-67 259.6 410 44.4
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 3.9e-67 259.6 411 43.6
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 8.7e-67 258.5 410 51.5
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 2.5e-66 256.9 412 47.3
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 5.6e-66 255.8 397 44.1
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 7.3e-66 255.4 406 51.7
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 9.6e-66 255.0 415 44.1
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 2.8e-65 253.4 396 42.4
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 3.6e-65 253.1 383 43.6
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 1.4e-64 251.1 412 46.4
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.8e-64 250.8 402 50.2
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 4.0e-64 249.6 394 44.7
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 1.2e-63 248.1 377 44.0
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 1.2e-63 248.1 400 44.8
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 2.6e-63 246.9 402 45.0
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 2.6e-63 246.9 400 44.0
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 4.5e-63 246.1 193 70.5
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 5.8e-63 245.7 416 42.8
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 1.3e-62 244.6 392 42.1
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 2.2e-62 243.8 393 45.5
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 2.9e-62 243.4 412 49.0
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 8.4e-62 241.9 395 43.3
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 9.3e-61 238.4 383 41.8
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 6.0e-60 235.7 408 46.1
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 1.3e-59 234.6 403 42.7
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 1.8e-59 234.2 408 42.9
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 6.7e-59 232.3 401 41.4
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 1.1e-58 231.5 405 41.5
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 1.5e-58 231.1 409 41.3
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 7.4e-58 228.8 407 43.7
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 9.6e-58 228.4 400 48.2
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 1.3e-57 228.0 410 44.6
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 1.3e-57 228.0 395 45.6
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 2.1e-57 227.3 401 42.1
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 2.8e-57 226.9 405 41.0
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 6.9e-56 222.2 381 45.7
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 3.4e-55 219.9 385 40.5
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 5.8e-55 219.2 421 45.4
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 7.6e-55 218.8 398 41.5
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 2.9e-54 216.9 384 41.1
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 6.5e-54 215.7 406 45.1
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 3.2e-53 213.4 400 41.5
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 1.6e-52 211.1 403 42.4
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 1.6e-52 211.1 405 43.7
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 2.7e-52 210.3 451 36.1
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 1.8e-51 207.6 398 42.2
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 3.0e-51 206.8 408 42.9
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 5.1e-51 206.1 398 43.7
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 8.7e-51 205.3 415 42.9
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 1.1e-50 204.9 420 39.8
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 3.3e-50 203.4 284 50.0
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 1.3e-49 201.4 393 37.9
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 1.6e-49 201.1 403 39.7
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 2.8e-49 200.3 467 35.8
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 1.8e-48 197.6 400 47.2
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 3.1e-48 196.8 407 48.4
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 5.3e-48 196.1 401 46.4
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 9.0e-48 195.3 285 49.5
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 1.2e-47 194.9 285 48.8
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 2.6e-47 193.7 405 40.5
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 4.5e-47 193.0 401 46.4
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 7.6e-47 192.2 402 37.1
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 3.2e-45 186.8 410 46.3
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 4.2e-45 186.4 388 41.2
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 7.2e-45 185.7 381 40.2
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 4.6e-44 183.0 395 42.8
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 7.9e-44 182.2 392 39.0
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 7.9e-44 182.2 417 38.1
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 3.9e-43 179.9 386 40.2
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 8.7e-43 178.7 391 38.9
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 8.7e-43 178.7 423 40.2
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 4.3e-42 176.4 407 34.9
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 4.3e-42 176.4 391 39.1
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 2.8e-41 173.7 427 36.8
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 1.3e-38 164.9 420 39.3
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 1.7e-38 164.5 400 36.0
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 2.2e-38 164.1 401 35.4
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 2.2e-38 164.1 403 35.0
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 1.6e-36 157.9 273 42.1
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 2.7e-36 157.1 424 40.6
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 4.6e-36 156.4 413 35.4
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 4.6e-36 156.4 413 35.4
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 6.1e-36 156.0 396 40.7
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 2.3e-35 154.1 423 38.3
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 5.1e-35 152.9 413 35.1
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 2.0e-34 151.0 420 33.3
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 3.7e-33 146.7 388 36.6
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 4.8e-33 146.4 276 40.2
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 8.2e-33 145.6 374 35.8
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 9.1e-32 142.1 382 40.8
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 1.2e-31 141.7 394 37.1
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 1.2e-31 141.7 399 36.8
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 1.2e-31 141.7 417 33.1
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 1.2e-31 141.7 396 39.4
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 2.6e-31 140.6 394 36.8
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 1.0e-30 138.7 399 36.8
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 5.0e-30 136.3 363 34.2
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 6.5e-30 136.0 417 32.9
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 1.1e-29 135.2 407 40.5
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 1.9e-29 134.4 408 36.3
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 3.2e-29 133.7 368 35.6
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 4.2e-29 133.3 363 38.6
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 5.5e-29 132.9 396 35.9
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 5.5e-29 132.9 389 34.2
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 7.2e-29 132.5 282 38.3
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 7.2e-29 132.5 368 35.9
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 7.2e-29 132.5 395 34.7
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 1.2e-28 131.7 373 33.5
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 6.1e-28 129.4 363 38.0
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 1.4e-27 128.3 421 39.2
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 6.7e-27 125.9 393 37.2
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 2.6e-26 124.0 415 31.8
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 2.6e-26 124.0 415 31.8
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 2.6e-26 124.0 396 34.8
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 2.6e-26 124.0 415 31.8
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 3.3e-26 123.6 271 38.7
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 2.4e-24 117.5 277 35.0
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 9.1e-24 115.5 239 42.3
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 1.0e-22 112.1 400 32.0
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 1.7e-22 111.3 322 31.1
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 3.8e-22 110.2 401 32.9
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 5.0e-22 109.8 393 33.6
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 2.5e-21 107.5 116 56.0
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 5.5e-21 106.3 273 37.7
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 1.2e-20 105.1 270 36.3
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 1.6e-20 104.8 234 35.0
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 2.7e-20 104.0 390 32.3
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 6.1e-20 102.8 393 31.8
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 1.5e-18 98.2 342 29.5
FAN05G5342 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.6e-18 97.4 85 74.1
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 5.9e-15 86.3 207 36.7
Zm00001eb208040 Zea mays HOM05D003811 ORTHO05D004470 7.7e-15 85.9 297 31.0
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 1.0e-14 85.5 275 30.9
FAN24G1311 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.9e-14 84.0 115 47.0
FvH4_2g01490 Fragaria vesca HOM05D003811 ORTHO05D004470 1.1e-13 82.0 115 46.1
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 2.0e-10 71.2 298 27.9
Zm00001eb226810 Zea mays HOM05D018649 ORTHO05D004470 7.5e-10 69.3 300 31.3
Lsat_1_v5_gn_9_75161 Lactuca sativa HOM05D003811 ORTHO05D036460 1.0e-06 58.9 54 46.3
Os06g0699600 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 1.0e-06 58.9 248 30.6
Zm00001eb272980 Zea mays HOM05D018649 ORTHO05D004470 1.3e-06 58.5 299 28.1
Lsat_1_v5_gn_5_27801 Lactuca sativa HOM05D003811 ORTHO05D036460 2.2e-06 57.8 54 46.3
Lsat_1_v5_gn_5_45681 Lactuca sativa HOM05D003811 ORTHO05D036460 2.2e-06 57.8 54 44.4


User provided reference genes

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