Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.0e-61 240.0 127 100.0
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 1.5e-41 172.9 126 68.3
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 1.5e-41 172.9 126 68.3
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 5.4e-39 164.5 126 66.7
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 9.3e-39 163.7 126 67.5
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 3.5e-38 161.8 126 65.1
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 1.3e-37 159.8 126 67.5
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 3.3e-36 155.2 126 65.1
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 2.1e-35 152.5 126 64.3
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 4.8e-35 151.4 126 61.9
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 1.8e-34 149.4 126 58.7
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 6.9e-34 147.5 126 60.3
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.2e-33 146.7 126 58.7
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 1.5e-33 146.4 126 61.1
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 2.6e-33 145.6 126 59.5
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 5.8e-33 144.4 126 59.5
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 1.7e-32 142.9 126 58.7
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 4.9e-32 141.4 126 60.3
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 4.9e-32 141.4 127 59.8
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 8.4e-32 140.6 126 57.1
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 1.9e-31 139.4 126 63.5
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.2e-31 138.3 131 56.5
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 5.5e-31 137.9 126 60.3
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 7.1e-31 137.5 126 57.1
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 7.1e-31 137.5 126 56.3
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 7.1e-31 137.5 126 56.3
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 2.7e-30 135.6 126 57.9
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 3.5e-30 135.2 126 58.7
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 3.5e-30 135.2 126 54.0
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 6.0e-30 134.4 126 57.1
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 7.9e-30 134.0 126 56.3
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 1.3e-29 133.3 126 57.9
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 1.8e-29 132.9 126 57.9
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 3.0e-29 132.1 151 49.7
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 3.0e-29 132.1 125 57.6
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 5.1e-29 131.3 126 52.4
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 1.9e-28 129.4 126 53.2
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 2.5e-28 129.0 126 54.8
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 2.5e-28 129.0 126 55.6
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.3e-28 128.3 131 55.0
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 4.3e-28 128.3 126 53.2
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 4.3e-28 128.3 126 56.3
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 4.3e-28 128.3 126 53.2
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 7.4e-28 127.5 126 54.0
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 9.6e-28 127.1 126 52.4
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 9.6e-28 127.1 126 50.8
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 9.6e-28 127.1 69 95.7
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 1.3e-27 126.7 126 57.9
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 1.6e-27 126.3 126 54.0
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 4.8e-27 124.8 126 56.3
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 4.8e-27 124.8 126 50.8
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 6.2e-27 124.4 125 49.6
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 1.8e-26 122.9 127 48.8
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.8e-26 122.9 126 51.6
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 3.1e-26 122.1 177 42.9
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 9.0e-26 120.6 126 48.4
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 1.5e-25 119.8 106 56.6
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 1.7e-24 116.3 144 47.2
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 3.8e-24 115.2 126 51.6
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 3.8e-24 115.2 126 49.2
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 4.9e-24 114.8 121 48.8
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 2.5e-23 112.5 126 48.4
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 2.5e-23 112.5 105 57.1
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.2e-22 110.2 100 57.0
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 1.6e-22 109.8 126 50.8
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 6.0e-22 107.8 120 48.3
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 6.0e-22 107.8 126 47.6
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 1.8e-21 106.3 163 42.3
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.9e-21 105.1 125 46.4
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 5.1e-21 104.8 126 46.0
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 5.1e-21 104.8 95 57.9
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 2.5e-20 102.4 108 51.9
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.3e-20 102.1 125 46.4
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.3e-19 100.1 126 48.4
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 3.7e-19 98.6 126 47.6
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 1.1e-18 97.1 101 56.4
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 4.1e-18 95.1 128 46.9
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 5.3e-18 94.7 102 54.9
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 6.9e-18 94.4 119 44.5
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 4.6e-14 81.6 108 46.3
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 3.9e-13 78.6 123 34.1
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 8.8e-13 77.4 86 52.3
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 1.1e-12 77.0 89 47.2
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 3.7e-11 72.0 120 33.3
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.4e-10 69.3 108 38.0
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 9.1e-10 67.4 54 63.0
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 7.7e-09 64.3 46 67.4
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 7.9e-06 54.3 75 44.0


User provided reference genes

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