Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 0.0e+00 1119.8 562 100.0
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.2e-257 892.1 539 85.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 3.3e-253 878.2 555 79.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.5e-242 842.8 420 99.8
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.3e-238 828.9 560 73.6
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.1e-230 801.2 554 72.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 4.3e-229 798.1 528 75.9
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 7.3e-229 797.3 563 73.0
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.0e-227 791.6 535 73.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 2.9e-225 785.4 555 72.6
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.1e-222 774.6 538 72.1
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 6.6e-222 774.2 559 69.4
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.3e-221 771.5 564 69.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 5.6e-221 771.2 537 71.5
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 5.6e-221 771.2 537 71.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 7.3e-221 770.8 535 71.8
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.6e-220 769.6 553 70.3
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.8e-219 766.1 554 70.2
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.9e-219 764.2 537 71.3
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-218 763.5 537 71.7
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.0e-218 762.7 526 72.6
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.6e-218 762.3 562 68.3
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 3.4e-218 761.9 540 71.9
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 4.9e-217 758.1 550 70.9
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.4e-216 756.5 520 72.3
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 7.1e-216 754.2 528 70.6
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-215 753.4 530 70.9
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.6e-215 753.1 582 66.8
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 7.9e-215 750.7 552 68.7
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.3e-214 749.2 471 76.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.9e-213 746.1 563 69.1
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.8e-212 741.5 528 70.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.1e-211 740.3 536 69.4
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.4e-211 739.2 528 69.3
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 4.0e-211 738.4 547 67.6
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.7e-209 733.0 528 69.3
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 4.9e-209 731.5 559 65.1
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.9e-209 731.5 559 66.5
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-208 729.6 505 70.5
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.5e-208 729.2 545 68.1
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.5e-208 729.2 548 67.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.5e-208 729.2 527 68.7
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 3.2e-208 728.8 537 66.7
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.2e-208 728.8 528 68.6
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.2e-207 726.9 537 66.7
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.6e-207 726.5 528 68.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-207 726.5 548 67.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.6e-207 724.9 539 68.5
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.0e-206 723.8 555 66.1
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 3.9e-206 721.8 566 65.2
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.7e-206 720.7 515 70.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.8e-204 715.7 492 71.5
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.8e-204 714.9 527 67.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 6.2e-204 714.5 515 67.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-202 710.3 540 66.3
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.5e-202 709.9 538 66.4
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.3e-201 706.8 490 70.6
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.2e-199 700.3 598 60.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.2e-199 700.3 529 64.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 8.7e-198 694.1 559 63.3
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 8.7e-198 694.1 487 69.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.3e-196 690.3 538 63.9
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 1.6e-196 689.9 501 66.7
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.2e-196 689.5 515 65.8
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.8e-196 689.1 561 62.2
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 9.0e-195 684.1 531 63.8
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.2e-194 683.7 542 64.8
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 2.6e-194 682.6 520 65.4
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-192 677.2 490 69.0
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 5.5e-192 674.9 519 63.8
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.9e-190 668.7 525 63.8
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 6.7e-190 667.9 507 65.9
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-189 667.2 475 69.5
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.0e-189 666.4 528 63.8
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 2.5e-189 666.0 614 57.8
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.7e-188 662.1 488 67.4
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.5e-186 656.8 490 66.3
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.2e-184 649.0 528 62.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 2.7e-183 646.0 527 60.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.6e-183 645.6 559 60.5
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.9e-177 625.9 510 61.2
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.9e-176 623.2 537 62.4
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.1e-175 619.8 553 60.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 8.8e-174 614.4 529 58.4
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.6e-170 603.6 497 60.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.6e-170 602.8 527 57.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.5e-168 597.0 527 60.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-168 597.0 528 58.1
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-168 596.3 507 60.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 7.2e-168 594.7 492 60.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.0e-166 590.9 490 60.2
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 6.8e-166 588.2 538 55.8
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.4e-165 585.5 425 69.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.5e-165 584.7 528 57.0
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.8e-164 582.8 488 58.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 6.3e-164 581.6 471 61.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.7e-161 573.5 452 65.7
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 5.0e-161 572.0 490 57.6
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 4.2e-160 568.9 528 55.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.0e-158 564.3 452 60.6
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-155 554.3 497 55.7
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.4e-155 553.1 454 63.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-154 550.8 529 57.1
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-154 549.7 494 56.9
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 2.3e-150 536.6 524 57.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.2e-147 526.2 533 52.9
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 7.3e-144 515.0 496 54.8
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-143 512.3 490 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.1e-142 509.6 505 51.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 5.2e-142 508.8 481 56.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 9.8e-141 504.6 443 56.9
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.4e-139 500.7 534 50.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 6.0e-138 495.4 394 61.4
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.9e-136 490.3 328 73.8
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.3e-136 489.2 394 58.4
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.8e-135 486.5 562 46.6
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.3e-129 467.6 323 70.0
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.9e-129 466.1 342 66.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.1e-126 458.0 458 52.2
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.8e-126 457.2 291 76.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 4.0e-126 456.1 394 61.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 5.1e-121 439.1 330 64.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.6e-121 438.7 339 66.7
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.6e-114 417.5 333 61.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.9e-113 412.9 338 58.0
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 7.3e-112 408.7 304 68.1
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.1e-111 407.1 441 51.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.3e-110 402.5 414 53.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.3e-110 402.5 641 37.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 4.5e-93 346.3 455 44.2
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.7e-88 329.3 275 56.0
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.2e-87 325.5 231 62.8
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.3e-83 312.0 222 62.2
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-78 298.5 346 46.5
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 9.0e-78 295.4 612 33.2
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.1e-74 284.3 215 68.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.8e-73 281.2 213 69.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.2e-71 274.2 184 72.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-69 266.2 273 54.6
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.8e-68 263.5 149 81.9
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 6.1e-66 256.1 146 81.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 8.8e-65 252.3 476 35.7
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 7.4e-64 249.2 146 80.8
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 9.7e-64 248.8 188 66.0
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-60 238.0 196 57.7
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 7.0e-54 216.1 134 76.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.0e-52 212.2 176 59.7
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-47 193.0 178 55.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.6e-45 188.3 189 54.0
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-41 175.6 128 64.8
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.2e-41 173.3 118 67.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-40 171.0 198 46.5
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.5e-37 160.6 171 45.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 3.8e-36 157.1 188 48.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.3e-35 154.1 143 57.3
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.8e-33 146.4 107 63.6
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.8e-26 124.4 76 69.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-20 103.6 123 40.7
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 6.2e-18 96.7 66 66.7
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 9.8e-16 89.4 73 63.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 9.8e-16 89.4 73 60.3
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.2e-10 72.4 63 57.1


User provided reference genes

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