Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 0.0e+00 2222.2 1125 100.0
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 0.0e+00 2020.0 1126 90.9
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1271.1 1134 59.3
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1249.2 1147 58.6
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1203.7 1237 54.8
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 0.0e+00 1192.2 1142 56.0
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1192.2 1146 56.9
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1177.9 1151 55.7
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1168.7 1145 55.4
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 1092.0 1153 52.9
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 1089.7 1151 52.4
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1085.9 1151 52.3
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1083.9 1148 52.4
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1080.9 1146 52.0
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 0.0e+00 1076.6 1136 51.3
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 5.4e-311 1071.2 1036 54.9
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 2.6e-310 1068.9 1130 51.9
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 7.6e-310 1067.4 1149 51.7
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 9.3e-308 1060.4 1129 51.4
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 9.3e-308 1060.4 1136 50.8
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 2.7e-307 1058.9 1133 51.6
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 1.3e-306 1056.6 1154 51.0
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.3e-306 1056.6 1132 50.9
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 2.5e-305 1052.4 1147 50.4
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 6.9e-303 1044.3 982 57.2
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 9.0e-303 1043.9 1199 51.4
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 1.9e-300 1036.2 1141 50.1
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 6.2e-296 1021.1 1136 49.7
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 6.9e-295 1017.7 1138 49.9
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 2.6e-294 1015.8 1147 51.2
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 6.5e-293 1011.1 1143 51.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 2.8e-280 969.1 1251 46.4
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 5.3e-279 964.9 1141 48.0
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 1.2e-278 963.8 1164 47.9
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 3.8e-277 958.7 1170 46.2
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 8.8e-274 947.6 1094 48.9
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 4.1e-271 938.7 810 61.5
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 9.1e-271 937.6 1134 47.6
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 1.1e-268 930.6 1131 48.1
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 2.1e-267 926.4 1142 45.6
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 2.0e-265 919.8 1131 47.5
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 8.2e-264 914.4 1137 47.2
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 7.0e-263 911.4 1133 47.1
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 5.5e-260 901.7 1139 47.4
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 7.2e-260 901.4 1146 46.2
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 3.1e-255 885.9 1113 47.5
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 8.5e-253 877.9 868 54.8
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 5.7e-249 865.1 1157 44.5
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 2.1e-243 846.7 1170 43.2
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 1.8e-242 843.6 1132 44.9
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 1.2e-241 840.9 1155 43.7
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 8.6e-237 824.7 1118 44.2
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 4.3e-236 822.4 948 50.7
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 2.1e-235 820.1 1174 42.2
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 1.4e-234 817.4 1145 44.5
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 1.7e-232 810.4 1145 42.6
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 1.9e-231 807.0 1015 46.3
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 1.5e-228 797.3 1138 42.7
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.1e-218 764.6 1012 44.8
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 3.1e-218 763.1 683 57.5
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 5.8e-217 758.8 932 46.6
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 8.4e-216 755.0 1088 43.6
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 3.0e-213 746.5 703 54.9
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.2e-206 724.5 863 48.3
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 7.8e-206 721.8 841 49.1
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 3.8e-192 676.4 851 47.1
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 2.4e-191 673.7 902 43.3
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 1.3e-187 661.4 1130 39.5
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 4.5e-185 652.9 1134 38.8
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 5.3e-178 629.4 1019 39.4
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 7.4e-164 582.4 1108 34.1
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 5.3e-162 576.2 1210 32.5
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 5.2e-141 506.5 871 38.9
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 1.0e-136 492.3 1139 32.1
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 6.8e-109 399.8 408 54.2
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 1.2e-100 372.5 301 63.1
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 2.6e-92 344.7 918 29.3
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 8.1e-86 323.2 309 57.6
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 9.0e-85 319.7 276 62.7
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 7.4e-79 300.1 1102 27.0
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 6.9e-77 293.5 327 50.8
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 7.6e-76 290.0 277 56.0
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 4.9e-75 287.3 405 43.0
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 1.0e-72 279.6 214 69.6
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 3.9e-72 277.7 397 42.3
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 3.8e-67 261.2 203 63.1
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.5e-66 258.5 265 55.8
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 3.5e-65 254.6 229 60.3
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 5.9e-60 237.3 434 37.3
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 8.7e-56 223.4 424 34.4
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 3.4e-44 184.9 155 65.2
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 3.4e-44 184.9 155 65.2
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 3.3e-39 168.3 810 24.2
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 5.7e-39 167.5 982 22.9
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 2.5e-34 152.1 161 52.2
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 3.2e-34 151.8 154 52.6
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 7.2e-34 150.6 122 68.0
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 6.1e-33 147.5 212 43.4
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 2.5e-26 125.6 162 45.1
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 4.4e-23 114.8 85 63.5
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.4e-16 93.2 91 56.0
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 2.1e-09 69.3 122 36.1


User provided reference genes

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