Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1452.6 734 100.0
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1449.1 734 99.7
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 0.0e+00 1357.0 758 92.2
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1291.6 724 89.8
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1125.9 729 77.2
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1120.9 710 78.2
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 0.0e+00 1119.4 734 77.0
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1113.2 711 78.1
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1111.7 729 76.7
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1109.7 731 75.4
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1102.8 712 76.3
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1100.9 728 75.3
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1097.0 731 75.6
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1091.3 728 74.2
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1087.8 714 75.8
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1082.0 709 75.0
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1080.9 744 72.3
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1080.5 712 74.6
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 4.2e-309 1064.3 711 73.4
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-308 1062.4 711 73.3
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 3.9e-307 1057.7 712 74.9
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 5.1e-307 1057.4 743 71.7
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.5e-306 1055.0 728 71.7
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.5e-306 1055.0 711 72.9
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.3e-306 1054.7 706 73.2
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 7.4e-306 1053.5 730 71.9
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 2.2e-305 1052.0 730 73.7
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.0e-302 1043.1 731 71.5
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 1.1e-298 1029.6 729 69.4
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 2.6e-298 1028.5 685 74.5
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 2.6e-298 1028.5 726 70.0
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.3e-297 1026.2 745 69.3
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 2.8e-297 1025.0 712 71.3
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 7.7e-295 1016.9 731 69.9
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 2.7e-292 1008.4 731 69.2
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 3.6e-292 1008.1 720 71.0
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 6.7e-291 1003.8 727 68.0
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 6.7e-291 1003.8 727 68.0
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 8.8e-291 1003.4 706 71.0
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 2.4e-288 995.3 735 70.5
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.6e-287 992.6 721 69.6
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 2.6e-287 991.9 711 69.2
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 1.0e-286 989.9 711 70.3
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.3e-286 989.6 711 70.7
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 5.5e-285 984.2 711 68.5
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 1.6e-284 982.6 783 64.6
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 3.6e-284 981.5 709 67.6
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 3.6e-284 981.5 714 68.5
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 4.7e-284 981.1 711 68.6
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 4.7e-284 981.1 711 69.6
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 6.1e-284 980.7 703 69.3
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.4e-283 979.5 711 68.5
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 6.8e-283 977.2 723 68.5
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 2.0e-282 975.7 710 68.3
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 5.7e-282 974.2 703 69.0
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 2.0e-279 965.7 711 66.8
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 7.7e-279 963.8 717 66.9
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 1.7e-278 962.6 714 66.7
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 2.2e-278 962.2 709 67.6
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 6.5e-278 960.7 689 68.8
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 5.2e-275 951.0 711 67.4
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 1.7e-273 946.0 711 66.5
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 4.8e-273 944.5 715 66.3
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 3.5e-271 938.3 717 66.8
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.7e-270 936.0 722 65.0
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 8.6e-270 933.7 694 67.6
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 7.0e-264 914.1 710 66.3
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 6.8e-259 897.5 828 57.5
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 1.5e-258 896.3 730 62.1
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 2.0e-258 896.0 724 63.1
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 4.4e-258 894.8 589 75.9
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.2e-255 886.7 715 63.1
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 5.0e-254 881.3 560 77.1
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 1.9e-253 879.4 707 62.0
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 2.0e-250 869.4 708 61.7
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 2.0e-250 869.4 708 61.7
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 4.4e-250 868.2 723 61.5
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 2.2e-249 865.9 728 62.8
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 6.4e-249 864.4 731 60.5
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.4e-248 863.2 712 61.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 4.6e-247 858.2 728 60.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 1.1e-245 853.6 723 60.4
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 7.3e-245 850.9 734 60.5
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 7.3e-245 850.9 615 68.1
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.7e-244 848.2 710 63.9
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 1.2e-239 833.6 661 64.3
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 5.1e-238 828.2 614 66.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 5.6e-237 824.7 722 58.4
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 2.3e-230 802.7 749 58.3
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 3.4e-210 735.7 610 61.8
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 5.8e-210 734.9 473 77.4
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 4.3e-205 718.8 622 58.4
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 8.7e-198 694.5 730 51.8
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.2e-188 663.3 454 72.2
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 1.0e-177 627.9 473 66.2
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 1.1e-173 614.4 456 67.1
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 5.7e-173 612.1 737 46.5
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 1.3e-172 610.9 467 63.8
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 7.7e-170 601.7 742 44.5
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 1.3e-169 600.9 472 63.6
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 3.0e-158 563.1 433 69.1
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.2e-157 561.2 480 59.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 8.0e-151 538.5 427 62.8
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 2.3e-150 537.0 308 87.7
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.9e-148 530.0 390 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 1.1e-144 518.1 690 42.6
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 2.6e-141 506.9 381 68.5
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 1.4e-134 484.6 689 42.8
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.3e-132 478.0 421 59.4
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 2.1e-127 460.7 750 38.0
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 7.8e-122 442.2 737 38.0
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.7e-116 424.5 327 65.1
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.7e-113 414.5 369 60.7
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.4e-109 399.8 295 69.5
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 1.3e-81 308.5 193 78.8
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 3.3e-72 277.3 192 69.3
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.0e-69 268.1 245 59.2
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.3e-55 219.9 315 43.2
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 6.1e-42 176.8 156 57.1
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 6.3e-39 166.8 144 63.2
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 9.2e-38 162.9 152 56.6
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.5e-37 161.0 162 54.9
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.0e-33 147.9 97 73.2
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 8.9e-33 146.4 115 63.5
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.7e-32 143.7 125 64.0
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 6.4e-31 140.2 267 36.3
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 6.4e-31 140.2 531 27.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 2.0e-29 135.2 813 24.0
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 1.0e-25 122.9 131 51.1
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 4.0e-25 120.9 96 60.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 5.8e-24 117.1 84 71.4
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.5e-24 116.7 83 71.1
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 3.3e-19 101.3 66 71.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.4e-16 91.3 74 60.8
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-15 89.0 115 48.7
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.5e-11 75.9 61 63.9
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.6e-10 72.4 51 68.6
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 2.1e-10 72.0 51 66.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.2e-10 70.5 56 66.1
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 4.0e-09 67.8 71 49.3
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.6e-08 65.1 110 38.2
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 3.4e-08 64.7 134 33.6


User provided reference genes

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