Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 0.0e+00 2273.4 1163 100.0
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 0.0e+00 2096.2 1164 92.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 0.0e+00 1182.9 1168 55.6
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 0.0e+00 1124.0 1163 52.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 0.0e+00 1113.2 1168 52.3
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1103.6 1168 51.1
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 0.0e+00 1100.1 1168 51.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 0.0e+00 1094.7 1162 51.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 0.0e+00 1075.1 1178 51.4
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.1e-310 1069.3 1170 51.4
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 3.0e-309 1065.4 1171 51.3
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 3.0e-301 1038.9 1167 49.9
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.2e-294 1016.9 1168 48.4
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 4.6e-294 1015.0 1165 49.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.3e-292 1008.8 1200 47.2
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 8.2e-291 1004.2 1201 47.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 8.2e-283 977.6 1172 47.0
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 6.5e-280 968.0 1170 48.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 7.9e-278 961.1 1097 49.5
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.2e-273 947.2 1155 47.3
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 7.4e-268 927.9 1163 47.2
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.0e-264 917.5 1160 45.5
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.2e-264 916.4 1170 46.2
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.5e-263 911.8 1172 46.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.3e-261 906.4 1169 44.6
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.0e-261 906.0 1186 45.4
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 4.0e-261 905.6 1199 45.5
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 6.7e-261 904.8 1169 45.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 5.9e-257 891.7 1163 44.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.7e-256 890.2 1171 45.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.8e-253 880.2 1170 45.5
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 7.5e-252 874.8 1101 46.1
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.7e-251 873.6 1179 43.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.8e-250 870.2 981 50.8
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.4e-250 869.8 1175 43.0
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 5.4e-250 868.6 1168 43.9
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 6.5e-248 861.7 1172 43.3
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.0e-245 852.4 1164 44.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 7.5e-244 848.2 1168 43.5
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.4e-242 844.0 1189 43.7
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 2.7e-241 839.7 1166 42.6
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.5e-241 839.0 1171 43.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.4e-234 815.5 1266 40.8
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.2e-233 814.3 1174 42.8
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-232 810.8 1172 43.1
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.3e-231 806.2 947 47.9
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 6.8e-229 798.5 1057 44.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.3e-227 794.3 1170 42.6
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.9e-226 790.4 1002 45.1
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.2e-225 787.7 1167 41.3
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.9e-224 782.7 1172 40.9
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 4.4e-220 769.2 1165 39.6
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.2e-219 766.9 1164 39.8
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.2e-217 761.1 1170 40.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 2.3e-216 756.9 907 47.5
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 3.9e-216 756.1 1178 39.9
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 5.1e-216 755.7 1174 40.4
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.5e-215 754.2 1165 39.0
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 5.6e-215 752.3 1185 39.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 3.1e-213 746.5 1169 39.3
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 5.8e-212 742.3 1166 39.4
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 4.9e-211 739.2 1166 39.1
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-210 738.0 1160 39.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.6e-209 734.2 1195 38.7
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.0e-208 731.5 1181 38.3
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.3e-208 731.1 1164 38.5
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.3e-208 730.3 1165 38.9
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.7e-208 728.4 1194 38.6
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.7e-208 728.4 1194 38.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-207 728.0 1165 39.2
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.5e-207 726.9 1178 39.0
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.6e-206 723.0 1167 37.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.6e-206 723.0 1188 39.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.2e-204 718.0 1196 38.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 4.8e-198 696.0 1167 37.1
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 5.3e-197 692.6 1170 37.9
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.0e-196 690.6 1168 38.1
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 3.4e-196 689.9 1180 38.0
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 7.6e-196 688.7 1166 37.7
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.6e-193 681.0 1223 37.0
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.4e-186 657.1 1175 36.2
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.7e-185 653.7 1178 36.3
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-184 651.0 978 40.8
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.1e-181 641.7 1165 35.3
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 9.0e-181 638.6 896 42.7
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 3.0e-176 623.6 1116 35.9
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 3.8e-171 606.7 1165 35.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.2e-166 590.9 1177 35.4
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.7e-163 581.3 968 38.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.7e-158 564.7 1146 35.3
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.6e-153 548.1 1214 32.1
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 8.8e-144 515.8 1267 30.0
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 5.0e-139 500.0 937 37.6
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 6.8e-136 489.6 1250 29.2
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.3e-131 475.3 663 41.3
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 6.6e-123 446.4 904 32.5
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 3.7e-110 404.1 805 35.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.5e-95 355.5 446 47.1
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 5.1e-83 313.9 305 56.7
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.1e-82 312.8 1280 25.5
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.5e-82 312.4 302 57.6
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.3e-82 311.2 430 40.9
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 5.6e-82 310.5 1287 25.9
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.3e-81 309.3 301 58.5
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 4.8e-81 307.4 301 58.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 1.4e-80 305.8 302 55.6
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.5e-79 302.4 301 56.1
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.0e-70 273.1 274 56.2
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 2.5e-69 268.5 301 53.5
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.3e-67 261.9 238 58.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.4e-66 256.9 238 57.6
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 3.1e-64 251.5 304 46.7
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.1e-64 251.5 357 43.4
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.2e-63 249.6 304 46.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 9.3e-61 240.0 1124 25.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.8e-57 228.4 421 35.2
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 6.3e-57 227.3 176 65.9
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 5.9e-55 220.7 203 56.7
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.9e-54 218.4 508 32.5
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 7.9e-52 210.3 176 59.7
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 2.8e-49 201.8 177 61.0
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 5.3e-48 197.6 538 30.7
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.6e-47 195.3 172 59.9
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.9e-46 191.8 317 36.0
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.9e-45 189.1 169 60.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 5.5e-45 187.6 189 52.4
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.7e-38 166.0 841 25.1
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.1e-34 153.3 361 29.4
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 4.4e-34 151.4 225 38.7
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 7.7e-31 140.6 255 34.5
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.5e-30 137.1 310 33.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 8.5e-30 137.1 127 59.1
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.1e-28 132.5 236 36.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.1e-24 118.2 115 56.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.0e-23 115.9 117 55.6
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.5e-21 109.8 423 25.8
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.5e-18 99.8 98 59.2
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 4.9e-17 94.7 108 53.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 2.5e-13 82.4 77 59.7
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 3.3e-13 82.0 101 51.5
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.6e-12 79.7 97 50.5
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 6.1e-12 77.8 97 46.4
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 5.2e-11 74.7 129 45.0
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 7.5e-10 70.9 45 71.1
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 7.5e-10 70.9 49 65.3
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.7e-09 69.7 45 68.9
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 5.4e-08 64.7 117 33.3
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.2e-07 63.5 130 33.8


User provided reference genes

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