Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 0.0e+00 1084.3 579 100.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.2e-265 918.7 598 85.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 7.2e-264 913.7 598 84.9
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.1e-263 912.1 570 85.1
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.6e-223 779.6 573 73.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.1e-202 709.5 576 68.1
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.5e-200 702.6 573 67.2
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 4.3e-200 701.8 565 68.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.8e-198 696.4 562 67.3
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 5.8e-197 691.4 578 66.4
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.3e-196 690.3 562 67.3
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.9e-195 686.4 571 65.8
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 9.3e-195 684.1 563 65.7
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.6e-194 683.3 561 66.3
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 2.4e-190 669.5 570 63.7
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 4.5e-189 665.2 573 64.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 3.8e-188 662.1 572 63.5
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 8.4e-188 661.0 570 63.5
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.4e-187 660.2 570 62.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.9e-187 659.8 570 63.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 3.2e-187 659.1 566 64.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-187 659.1 562 64.8
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 7.2e-187 657.9 573 63.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.7e-186 656.0 563 63.6
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 3.5e-186 655.6 576 63.4
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 4.6e-186 655.2 570 63.2
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.3e-185 652.9 562 62.3
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 5.1e-185 651.7 565 64.1
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 1.1e-184 650.6 575 62.4
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.3e-184 649.0 435 81.1
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.3e-184 648.7 579 61.5
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 5.3e-182 641.7 574 61.5
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.9e-182 641.3 581 62.3
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-181 640.6 572 62.8
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 3.4e-181 639.0 581 61.3
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.7e-180 636.7 570 61.8
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.2e-180 636.3 561 62.9
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 2.2e-180 636.3 575 61.7
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.9e-180 636.0 581 61.8
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.0e-180 635.2 577 60.8
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-180 635.2 581 61.6
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 5.0e-180 635.2 560 62.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 6.5e-180 634.8 563 61.3
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.1e-179 634.0 573 62.3
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-179 633.6 570 61.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.2e-179 632.5 576 60.6
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 7.2e-179 631.3 559 62.1
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 4.3e-176 622.1 578 60.4
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.8e-175 619.4 573 58.6
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.1e-174 617.5 564 60.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-174 617.5 665 53.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 6.9e-174 614.8 560 61.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.4e-173 612.5 570 59.8
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 4.5e-173 612.1 571 59.7
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 7.7e-173 611.3 560 60.2
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.0e-172 610.9 561 59.0
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.7e-172 610.1 561 60.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.2e-172 609.8 572 60.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 2.9e-172 609.4 571 59.4
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 3.8e-172 609.0 573 60.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-172 608.6 562 60.5
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 6.5e-172 608.2 578 59.2
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 4.2e-171 605.5 572 58.7
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 5.5e-171 605.1 564 60.1
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 7.2e-171 604.7 574 58.9
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.0e-169 600.9 565 60.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.4e-169 600.5 564 57.6
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.8e-169 600.1 564 57.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.7e-169 598.2 565 60.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 4.4e-168 595.5 573 60.0
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.3e-167 594.0 578 56.6
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.2e-167 593.2 567 58.4
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.1e-166 589.0 582 56.9
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.1e-166 589.0 565 56.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 2.5e-163 579.7 559 57.2
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 3.6e-162 575.9 561 56.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.0e-161 574.3 567 57.7
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 5.2e-161 572.0 572 56.6
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 5.7e-160 568.5 566 55.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.4e-158 563.9 568 54.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 5.3e-158 562.0 561 56.1
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.3e-158 562.0 565 55.9
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 7.0e-158 561.6 562 56.9
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.5e-157 559.3 556 54.0
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.5e-157 558.9 573 54.3
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 4.5e-157 558.9 572 54.4
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.0e-156 557.8 560 55.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.3e-156 557.4 563 54.2
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.2e-156 556.6 572 56.3
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 7.2e-155 551.6 567 54.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 9.4e-155 551.2 572 54.4
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.0e-153 547.7 580 54.3
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 8.8e-153 544.7 565 54.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.2e-152 544.3 565 54.5
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.7e-151 539.3 564 54.3
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 8.3e-151 538.1 566 54.1
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.0e-150 535.0 564 53.7
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.6e-149 533.9 571 53.6
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 9.2e-142 508.1 582 50.7
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 4.3e-139 499.2 424 64.6
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 8.0e-138 495.0 555 50.5
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-137 493.8 590 50.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 5.2e-137 492.3 563 53.1
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.5e-136 488.4 429 63.4
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 5.0e-132 475.7 449 57.0
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.3e-131 472.6 501 56.3
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-127 461.1 528 52.7
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 8.6e-124 448.4 568 49.5
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 3.3e-123 446.4 562 45.7
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.6e-120 436.8 580 45.9
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.8e-114 416.8 561 44.4
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.2e-114 415.6 375 61.1
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-112 411.4 299 70.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.3e-111 407.9 563 44.2
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 5.6e-107 392.5 281 72.2
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 7.3e-107 392.1 575 43.8
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.9e-99 367.5 586 40.6
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 7.3e-99 365.5 390 53.6
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.2e-90 335.9 465 46.9
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-84 317.8 483 43.1
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 3.2e-78 297.0 516 40.5
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.2e-78 297.0 353 51.3
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.8e-76 291.2 309 53.7
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-67 261.2 261 58.2
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-62 243.0 225 60.4
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.2e-62 242.7 500 37.8
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.8e-58 229.9 158 72.8
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.1e-57 228.8 411 36.5
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-56 225.3 175 64.6
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-44 183.3 313 40.3
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 6.7e-44 183.0 138 71.0
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.5e-43 181.8 141 68.8
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-39 169.1 118 75.4
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-38 165.6 118 73.7
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-38 164.5 139 65.5
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 5.4e-33 146.7 143 53.1
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.3e-28 131.3 291 37.1
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-22 112.1 183 37.2
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 3.0e-20 104.4 105 52.4
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 5.7e-19 100.1 104 50.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-18 98.6 86 64.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-17 95.1 85 63.5
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.2e-16 92.4 87 51.7
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-14 84.3 154 39.0
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-12 79.3 167 35.3
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 2.3e-12 78.2 67 59.7
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-10 70.9 42 78.6
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-09 68.2 157 33.8
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-09 68.2 171 35.1
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.6e-08 63.9 48 66.7
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 2.3e-07 61.6 188 36.2
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 4.3e-06 57.4 43 58.1
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 7.3e-06 56.6 53 60.4
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 7.3e-06 56.6 64 53.1


User provided reference genes

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