Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.4e-44 181.8 92 100.0
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.2e-33 144.8 92 78.3
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.0e-30 135.6 85 80.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.0e-30 135.6 85 80.0
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.2e-24 116.3 93 62.4
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.1e-24 115.5 92 60.9
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.8e-23 112.5 92 63.0
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.8e-23 112.5 91 59.3
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 3.0e-23 111.7 91 59.3
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 3.0e-23 111.7 92 58.7
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.0e-22 109.0 91 57.1
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.4e-22 108.2 92 57.6
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 5.7e-22 107.5 92 54.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.7e-21 105.9 91 58.2
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.7e-21 105.9 92 56.5
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.2e-21 105.5 91 57.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.2e-21 105.5 92 56.5
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 4.8e-21 104.4 92 57.6
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 7.0e-20 100.5 87 57.5
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.6e-19 99.4 92 54.3
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 4.5e-19 97.8 87 58.6
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.9e-19 97.4 88 53.4
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.0e-18 96.7 92 53.3
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-18 96.7 88 52.3
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.0e-18 96.7 88 52.3
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.7e-18 95.9 90 51.1
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.2e-18 95.5 88 52.3
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.8e-18 94.7 92 54.3
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.5e-17 92.0 88 52.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.5e-17 92.0 88 50.0
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.2e-17 91.7 88 52.3
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 4.2e-17 91.3 92 51.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 5.5e-17 90.9 88 50.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 7.2e-17 90.5 87 51.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 9.5e-17 90.1 87 52.9
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.2e-16 89.7 87 52.9
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.1e-16 89.0 92 53.3
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 2.8e-16 88.6 87 52.9
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 2.8e-16 88.6 88 52.3
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.8e-16 88.6 87 50.6
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 4.7e-16 87.8 89 48.3
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 6.1e-16 87.4 91 49.5
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 6.1e-16 87.4 91 49.5
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.0e-15 86.7 87 50.6
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.4e-15 86.3 88 51.1
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.3e-15 85.5 88 50.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 4.0e-15 84.7 90 44.4
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 5.2e-15 84.3 88 51.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 5.2e-15 84.3 89 49.4
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 8.8e-15 83.6 89 48.3
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 8.8e-15 83.6 89 48.3
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.2e-14 83.2 92 46.7
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.5e-14 82.8 92 47.8
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.0e-14 82.4 88 50.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.0e-14 82.4 88 50.0
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.6e-14 82.0 90 43.3
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 2.6e-14 82.0 87 49.4
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 3.4e-14 81.6 90 43.3
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 7.5e-14 80.5 90 48.9
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 9.8e-14 80.1 87 50.6
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.2e-13 79.0 91 50.5
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.9e-13 77.8 87 46.0
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 6.3e-13 77.4 88 45.5
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 6.3e-13 77.4 87 46.0
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.3e-13 77.4 87 49.4
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.3e-13 77.4 87 49.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 6.3e-13 77.4 85 48.2
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.4e-12 76.3 87 48.3
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.4e-12 76.3 87 49.4
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.8e-12 75.9 87 49.4
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.4e-12 75.5 87 43.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.1e-12 75.1 90 41.1
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 4.1e-12 74.7 87 47.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 9.2e-12 73.6 87 48.3
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.3e-10 69.7 87 46.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.3e-10 69.7 87 43.7
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.9e-10 68.6 87 40.2
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.9e-10 68.6 90 40.0
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 3.8e-10 68.2 87 40.2
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.5e-09 65.5 90 37.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.5e-09 65.5 87 39.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.3e-09 65.1 80 42.5
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.3e-09 64.7 88 44.3
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.3e-09 64.7 87 43.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.3e-09 63.9 80 41.2
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 7.3e-09 63.9 88 44.3
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.2e-08 63.2 93 39.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.6e-08 62.8 90 40.0
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.6e-08 62.8 90 40.0
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 2.1e-08 62.4 88 43.2
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 2.1e-08 62.4 90 41.1
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.7e-08 61.2 88 40.9
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.0e-07 60.1 90 41.1
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.8e-07 59.3 90 40.0
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.3e-07 58.9 81 40.7
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 2.3e-07 58.9 87 37.9
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 3.0e-07 58.5 92 37.0
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.0e-07 58.2 88 39.8
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 4.0e-07 58.2 88 39.8
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.0e-07 58.2 90 37.8
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.0e-07 58.2 87 42.5
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 6.8e-07 57.4 81 39.5


User provided reference genes

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