Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 2.8e-171 605.1 300 100.0
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 2.4e-138 495.7 366 71.6
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 3.3e-119 432.2 297 73.1
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 2.0e-87 326.6 300 55.0
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 1.7e-83 313.5 299 53.8
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 3.2e-82 309.3 303 51.2
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 2.8e-78 296.2 281 53.7
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 1.1e-77 294.3 330 47.9
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 2.7e-76 289.7 300 51.3
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 1.0e-75 287.7 305 50.5
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 1.9e-74 283.5 304 50.0
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 3.2e-74 282.7 292 50.0
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 2.1e-73 280.0 305 49.8
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 3.6e-73 279.3 316 49.7
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 4.1e-69 265.8 301 48.5
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 9.1e-69 264.6 301 48.2
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 1.2e-68 264.2 302 48.3
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 1.0e-67 261.2 300 47.7
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 1.7e-67 260.4 299 47.2
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 3.6e-65 252.7 224 55.4
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 6.1e-65 251.9 276 47.8
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 1.8e-64 250.4 298 46.3
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 1.8e-64 250.4 280 45.0
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 3.0e-64 249.6 301 45.8
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 2.6e-63 246.5 299 44.8
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 2.4e-61 240.0 307 43.3
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 4.5e-60 235.7 292 43.2
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.7e-59 233.8 273 46.9
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.8e-57 226.5 299 41.5
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 3.0e-56 223.0 297 40.4
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 4.0e-56 222.6 308 40.9
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 2.0e-55 220.3 231 49.8
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 2.6e-55 219.9 300 38.0
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 4.4e-55 219.2 304 40.1
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 9.8e-55 218.0 304 43.8
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 1.3e-54 217.6 286 40.9
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 2.2e-54 216.9 260 43.5
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 4.9e-54 215.7 299 38.8
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 7.0e-53 211.8 301 39.9
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 5.9e-52 208.8 302 38.4
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 3.0e-51 206.5 304 40.8
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 3.9e-51 206.1 296 39.5
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 5.0e-51 205.7 316 37.0
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 6.6e-51 205.3 299 39.8
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 4.3e-50 202.6 299 39.1
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 4.3e-50 202.6 298 40.3
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 9.5e-50 201.4 297 39.7
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.1e-49 200.3 210 49.5
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 8.0e-49 198.4 298 38.9
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 1.0e-48 198.0 300 38.0
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 3.1e-48 196.4 303 39.9
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 4.0e-48 196.1 325 36.0
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 1.5e-47 194.1 305 37.0
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 2.2e-46 190.3 299 37.1
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 1.1e-45 188.0 299 36.8
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 1.4e-45 187.6 288 37.5
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 1.2e-44 184.5 265 38.5
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 2.0e-44 183.7 299 36.5
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 2.0e-44 183.7 299 36.5
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 3.5e-44 183.0 264 38.3
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 1.0e-43 181.4 299 37.5
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 3.9e-43 179.5 299 36.1
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 8.6e-43 178.3 298 35.9
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 3.6e-41 172.9 300 36.0
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 1.1e-40 171.4 296 34.5
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 2.6e-39 166.8 178 48.9
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 3.4e-39 166.4 289 38.4
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 7.5e-39 165.2 295 35.3
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 1.3e-38 164.5 297 34.0
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 1.7e-38 164.1 295 34.9
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 6.0e-36 155.6 205 41.0
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 2.3e-35 153.7 213 40.4
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 2.5e-34 150.2 277 39.0
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 3.4e-31 139.8 299 30.4
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 1.6e-28 131.0 172 43.0
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 1.1e-24 118.2 186 37.6
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 1.5e-23 114.4 235 32.3
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 3.4e-23 113.2 262 29.4
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 5.8e-23 112.5 200 35.0
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 1.4e-21 107.8 98 57.1
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 1.5e-15 87.8 58 70.7
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 2.0e-15 87.4 147 34.7
SGA_v2.0_scaffold214G42289 Striga asiatica HOM05D003067 ORTHO05D009378 2.9e-14 83.6 242 28.9
Nitab4.5_0001478g0160 Nicotiana tabacum HOM05D003067 ORTHO05D009378 4.2e-13 79.7 164 31.1
SGA_v2.0_scaffold113G31772 Striga asiatica HOM05D003067 ORTHO05D009378 1.8e-08 64.3 172 29.7
Nitab4.5_0000525g0300 Nicotiana tabacum HOM05D003067 ORTHO05D009378 2.6e-07 60.5 141 29.8
Aa31LG2G19330 Aethionema arabicum HOM05D003067 ORTHO05D009378 4.5e-07 59.7 117 33.3
SEGI_40030 Sequoiadendron giganteum HOM05D023718 ORTHO05D009378 9.9e-07 58.5 126 33.3


User provided reference genes

Program Settings