Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G108850 Populus trichocarpa HOM05D000568 ORTHO05D003200 1.8e-58 229.2 124 100.0
Potri.012G092500 Populus trichocarpa HOM05D000568 ORTHO05D003200 2.2e-16 89.4 77 62.3
Sabra15G0111800 Salix brachista HOM05D000568 ORTHO05D003200 7.7e-14 80.9 97 47.4
Manes.14G055800 Manihot esculenta HOM05D000568 ORTHO05D003200 6.5e-13 77.8 64 59.4
CiPaw.11G013100 Carya illinoinensis HOM05D000568 ORTHO05D003200 4.7e-11 71.6 61 57.4
Potri.015G089100 Populus trichocarpa HOM05D000568 ORTHO05D003200 2.3e-10 69.3 44 70.5
Ca_16096_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 4.0e-10 68.6 64 50.0
Ca_30075_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 4.0e-10 68.6 64 50.0
Thecc.03G121400 Theobroma cacao HOM05D000568 ORTHO05D003200 5.2e-10 68.2 48 68.8
Glyma.04G192100 Glycine max HOM05D000568 ORTHO05D003200 8.8e-10 67.4 67 53.7
Phvul.009G169600 Phaseolus vulgaris HOM05D000568 ORTHO05D003200 8.8e-10 67.4 69 50.7
QL10p005500 Quercus lobata HOM05D000568 ORTHO05D003200 8.8e-10 67.4 60 51.7
Psat4g064560 Pisum sativum HOM05D000568 ORTHO05D003200 2.6e-09 65.9 61 54.1
Glyma.06G173700 Glycine max HOM05D000568 ORTHO05D003200 3.4e-09 65.5 66 53.0
Phvul.003G207900 Phaseolus vulgaris HOM05D000568 ORTHO05D003200 3.4e-09 65.5 60 56.7
Manes.06G114200 Manihot esculenta HOM05D000568 ORTHO05D003200 4.4e-09 65.1 38 71.1
COL.COLO4_08506 Corchorus olitorius HOM05D000568 ORTHO05D003200 5.7e-09 64.7 45 68.9
TPR.G37533 Trifolium pratense HOM05D000568 ORTHO05D003200 5.7e-09 64.7 60 51.7
arahy.Tifrunner.gnm1.ann1.S50S0B Arachis hypogaea HOM05D000568 ORTHO05D003200 9.8e-09 63.9 61 55.7
Ca_05568_v3 Cicer arietinum L. HOM05D000568 ORTHO05D003200 9.8e-09 63.9 58 53.4
Sabra12G0067200 Salix brachista HOM05D000568 ORTHO05D003200 9.8e-09 63.9 45 66.7
CiPaw.12G034800 Carya illinoinensis HOM05D000568 ORTHO05D003200 1.3e-08 63.5 61 52.5
Duzib068G0071 Durio zibethinus HOM05D000568 ORTHO05D003200 1.3e-08 63.5 47 68.1
Medtr4g104260 Medicago truncatula HOM05D000568 ORTHO05D003200 1.7e-08 63.2 58 53.4
TWI09G0389 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 2.2e-08 62.8 49 59.2
TWI39G0384 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 2.2e-08 62.8 49 59.2
Glyma.05G044300 Glycine max HOM05D000568 ORTHO05D003200 2.8e-08 62.4 60 51.7
VMungo1215G3297 Vigna mungo HOM05D000568 ORTHO05D003200 2.8e-08 62.4 60 55.0
arahy.Tifrunner.gnm1.ann1.9GY8Y8 Arachis hypogaea HOM05D000568 ORTHO05D003200 3.7e-08 62.0 61 54.1
Eucgr.B00161 Eucalyptus grandis HOM05D000568 ORTHO05D003200 3.7e-08 62.0 43 60.5
arahy.Tifrunner.gnm1.ann1.UBL83T Arachis hypogaea HOM05D000568 ORTHO05D003200 4.9e-08 61.6 57 56.1
Dinv38482 Davidia involucrata HOM05D000568 ORTHO05D003200 4.9e-08 61.6 46 58.7
GSVIVG01007563001 Vitis vinifera HOM05D000568 ORTHO05D003200 6.3e-08 61.2 54 53.7
Actinidia16197 Actinidia chinensis HOM05D000568 ORTHO05D003200 8.3e-08 60.8 61 49.2
Gohir.A07G053900 Gossypium hirsutum HOM05D000568 ORTHO05D003200 8.3e-08 60.8 37 73.0
Gohir.D07G058300 Gossypium hirsutum HOM05D000568 ORTHO05D003200 8.3e-08 60.8 48 60.4
Gorai.001G061800 Gossypium raimondii HOM05D000568 ORTHO05D003200 8.3e-08 60.8 48 60.4
Psat5g141360 Pisum sativum HOM05D000568 ORTHO05D003200 8.3e-08 60.8 66 48.5
ClCG03G003420 Citrullus lanatus HOM05D000568 ORTHO05D003200 1.1e-07 60.5 39 66.7
MELO3C002328.2 Cucumis melo HOM05D000568 ORTHO05D003200 1.1e-07 60.5 39 66.7
arahy.Tifrunner.gnm1.ann1.IMB0BX Arachis hypogaea HOM05D000568 ORTHO05D003200 1.4e-07 60.1 45 62.2
Glyma.17G126800 Glycine max HOM05D000568 ORTHO05D003200 1.4e-07 60.1 62 50.0
Lj1g0028025 Lotus japonicus HOM05D000568 ORTHO05D003200 1.4e-07 60.1 49 57.1
arahy.Tifrunner.gnm1.ann1.GT4GNB Arachis hypogaea HOM05D000568 ORTHO05D003200 1.8e-07 59.7 56 55.4
arahy.Tifrunner.gnm1.ann1.JPE2T4 Arachis hypogaea HOM05D000568 ORTHO05D003200 1.8e-07 59.7 56 55.4
arahy.Tifrunner.gnm1.ann1.SUW3ZA Arachis hypogaea HOM05D000568 ORTHO05D003200 1.8e-07 59.7 56 55.4
Atru.chr9.997 Acer truncatum HOM05D000568 ORTHO05D003200 2.4e-07 59.3 39 64.1
arahy.Tifrunner.gnm1.ann1.9WI7GI Arachis hypogaea HOM05D000568 ORTHO05D003200 2.4e-07 59.3 56 55.4
CsaV3_1G009210 Cucumis sativus L. HOM05D000568 ORTHO05D003200 2.4e-07 59.3 39 64.1
arahy.Tifrunner.gnm1.ann1.FZ17FK Arachis hypogaea HOM05D000568 ORTHO05D003200 3.1e-07 58.9 68 42.6
Duzib205G0872 Durio zibethinus HOM05D000568 ORTHO05D003200 3.1e-07 58.9 44 65.9
TWI14G0537 Tripterygium wilfordii HOM05D000568 ORTHO05D003200 4.1e-07 58.5 49 61.2
Actinidia16196 Actinidia chinensis HOM05D000568 ORTHO05D003200 5.4e-07 58.2 61 45.9
Ciclev10019979m.g Citrus clementina HOM05D000568 ORTHO05D003200 5.4e-07 58.2 53 54.7
SalBow1G0558 Salvia bowleyana HOM05D000568 ORTHO05D003200 5.4e-07 58.2 66 48.5
arahy.Tifrunner.gnm1.ann1.FMR26E Arachis hypogaea HOM05D000568 ORTHO05D003200 7.0e-07 57.8 57 52.6
Medtr3g075190 Medicago truncatula HOM05D000568 ORTHO05D003200 7.0e-07 57.8 53 52.8
PGR083G1817 Punica granatum HOM05D000568 ORTHO05D003200 7.0e-07 57.8 38 65.8
Haze_07286 Corylus avellana HOM05D000568 ORTHO05D003200 9.2e-07 57.4 34 70.6
Gohir.A11G035100 Gossypium hirsutum HOM05D000568 ORTHO05D003200 1.2e-06 57.0 36 66.7
Lsat_1_v5_gn_4_76400 Lactuca sativa HOM05D000568 ORTHO05D003200 1.6e-06 56.6 70 41.4
Cfa018900 Carpinus fangiana HOM05D000568 ORTHO05D003200 2.0e-06 56.2 34 67.6
MD14G1165500 Malus domestica HOM05D000568 ORTHO05D003200 2.0e-06 56.2 61 45.9
TAR622G0447 Trochodendron aralioides HOM05D000568 ORTHO05D003200 2.0e-06 56.2 38 63.2
arahy.Tifrunner.gnm1.ann1.4047RD Arachis hypogaea HOM05D000568 ORTHO05D003200 2.7e-06 55.8 58 50.0
THA.LOC109116000 Tarenaya hassleriana HOM05D004211 ORTHO05D003200 2.7e-06 55.8 69 47.8
Gohir.D11G038700 Gossypium hirsutum HOM05D000568 ORTHO05D003200 3.5e-06 55.5 36 63.9
Gorai.007G041600 Gossypium raimondii HOM05D000568 ORTHO05D003200 3.5e-06 55.5 36 63.9
Prupe.5G159100 Prunus persica HOM05D000568 ORTHO05D003200 3.5e-06 55.5 65 41.5
CANSAT80G2497 Cannabis sativa HOM05D000568 ORTHO05D003200 4.5e-06 55.1 50 52.0
FvH4_5g07100 Fragaria vesca HOM05D000568 ORTHO05D003200 4.5e-06 55.1 43 58.1
FAN18G1970 Fragaria x ananassa HOM05D000568 ORTHO05D003200 4.5e-06 55.1 43 58.1
Gorai.008G204400 Gossypium raimondii HOM05D000568 ORTHO05D003200 4.5e-06 55.1 54 51.9
Prupe.5G159000 Prunus persica HOM05D000568 ORTHO05D003200 4.5e-06 55.1 44 56.8
Rhsim12G0171400 Rhododendron simsii HOM05D000568 ORTHO05D003200 4.5e-06 55.1 37 59.5
AT5G63260 Arabidopsis thaliana HOM05D000568 ORTHO05D003200 5.9e-06 54.7 58 44.8
arahy.Tifrunner.gnm1.ann1.3LKU2S Arachis hypogaea HOM05D000568 ORTHO05D003200 5.9e-06 54.7 55 52.7
MSTRG.4585 Avicennia marina HOM05D000568 ORTHO05D003200 5.9e-06 54.7 48 54.2
Migut.I00264 Erythranthe guttata HOM05D000568 ORTHO05D003200 5.9e-06 54.7 60 50.0
Lj4g0012486 Lotus japonicus HOM05D000568 ORTHO05D003200 5.9e-06 54.7 60 41.7
TAR371G0438 Trochodendron aralioides HOM05D000568 ORTHO05D003200 5.9e-06 54.7 49 49.0
Dinv33396 Davidia involucrata HOM05D000568 ORTHO05D003200 7.7e-06 54.3 63 47.6
FAN13G1895 Fragaria x ananassa HOM05D000568 ORTHO05D003200 7.7e-06 54.3 55 47.3
Gohir.A12G187600 Gossypium hirsutum HOM05D000568 ORTHO05D003200 7.7e-06 54.3 54 50.0
Peaxi162Scf00089g00842 Petunia axillaris HOM05D000568 ORTHO05D003200 7.7e-06 54.3 60 53.3
Solyc06g071860.3 Solanum lycopersicum HOM05D000568 ORTHO05D003200 7.7e-06 54.3 44 59.1
vmacro16700 Vaccinium macrocarpon HOM05D000568 ORTHO05D003200 7.7e-06 54.3 36 61.1


User provided reference genes

Program Settings