Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 3.4e-194 681.4 322 100.0
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 5.2e-179 630.9 316 93.0
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 7.8e-167 590.5 311 87.8
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 3.0e-166 588.6 309 87.1
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 8.6e-166 587.0 312 85.9
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.9e-165 585.9 311 86.5
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 1.9e-165 585.9 369 78.6
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 4.3e-165 584.7 306 86.9
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 3.6e-164 581.6 309 86.4
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 6.2e-164 580.9 305 87.9
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.4e-163 579.7 310 84.2
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.8e-163 579.3 312 85.6
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 2.3e-163 578.9 305 85.9
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 2.3e-163 578.9 305 86.2
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 2.6e-162 575.5 305 86.6
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 2.6e-162 575.5 306 86.3
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 4.4e-162 574.7 306 85.3
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 1.3e-161 573.2 310 83.9
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 2.2e-161 572.4 309 84.5
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 3.7e-161 571.6 311 83.3
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 3.7e-161 571.6 312 83.7
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 3.7e-161 571.6 306 85.6
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.7e-161 571.6 305 86.2
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 3.7e-161 571.6 314 83.8
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.9e-161 571.2 310 83.9
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 6.4e-161 570.9 307 86.3
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 5.4e-160 567.8 305 85.6
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 9.2e-160 567.0 312 83.7
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.2e-159 566.6 305 85.6
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 1.2e-159 566.6 307 83.4
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.6e-159 566.2 305 84.6
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.7e-158 562.8 309 83.8
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.5e-157 559.7 305 83.3
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 4.3e-157 558.1 309 83.8
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 5.6e-157 557.8 312 82.7
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 7.3e-157 557.4 304 82.6
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 7.3e-157 557.4 314 80.6
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 9.6e-157 557.0 305 84.3
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 9.6e-157 557.0 420 68.6
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.2e-156 556.6 310 81.6
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.6e-156 556.2 316 80.4
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 3.6e-156 555.1 303 82.5
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 1.1e-155 553.5 303 84.8
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 3.1e-155 552.0 304 83.9
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 6.8e-155 550.8 306 84.3
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 8.9e-155 550.4 303 81.8
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 1.5e-154 549.7 305 81.0
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 2.0e-154 549.3 304 81.2
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 3.4e-154 548.5 309 82.5
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.3e-153 546.6 305 83.0
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 2.9e-153 545.4 308 81.2
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.1e-152 543.5 305 82.6
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.1e-152 543.5 305 80.3
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 3.2e-152 542.0 305 82.6
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.3e-150 536.6 309 80.9
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 1.1e-149 533.5 316 77.5
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 1.5e-149 533.1 319 77.4
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 1.9e-149 532.7 306 81.7
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 2.5e-149 532.3 319 77.4
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 3.3e-149 531.9 319 77.4
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 3.3e-149 531.9 319 77.4
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 5.6e-149 531.2 319 77.1
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 9.6e-149 530.4 311 79.1
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 1.3e-148 530.0 305 81.6
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 8.1e-148 527.3 300 81.7
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 7.6e-146 520.8 293 83.6
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 3.2e-144 515.4 303 80.2
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 7.1e-144 514.2 306 78.8
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 3.0e-142 508.8 305 76.1
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.3e-137 493.4 267 84.6
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 2.7e-135 485.7 275 81.1
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 1.1e-133 480.3 265 83.8
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 4.8e-132 474.9 293 75.8
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 2.9e-129 465.7 314 72.0
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 4.9e-129 464.9 324 68.8
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 2.5e-128 462.6 303 71.9
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.6e-124 449.9 262 80.2
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 5.8e-122 441.4 303 70.6
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.1e-119 433.0 305 63.0
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.8e-118 429.9 248 80.6
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 6.3e-108 394.8 333 61.0
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 4.5e-98 362.1 269 66.5
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 2.1e-95 353.2 303 61.4
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.3e-92 341.7 179 87.2
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.6e-87 327.0 186 81.7
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 6.1e-87 325.1 179 82.1
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 1.5e-85 320.5 168 85.1
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 7.5e-85 318.2 169 85.8
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.3e-84 317.4 168 85.7
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 2.2e-84 316.6 162 87.0
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 3.1e-83 312.8 166 83.1
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 5.4e-83 312.0 163 85.9
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 2.0e-82 310.1 163 85.3
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 2.7e-82 309.7 162 87.7
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 5.9e-82 308.5 162 85.8
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 7.7e-82 308.1 161 86.3
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 1.0e-81 307.8 160 87.5
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 1.7e-81 307.0 160 87.5
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.8e-81 305.8 162 85.2
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 4.2e-80 302.4 163 84.0
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 1.2e-74 284.3 248 51.6
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 4.5e-74 282.3 179 73.7
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 1.5e-69 267.3 144 86.8
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 4.9e-60 235.7 124 87.1
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 4.9e-60 235.7 124 87.1
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 8.3e-60 235.0 124 85.5
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.1e-59 234.6 124 87.1
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 5.4e-59 232.3 124 86.3
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 5.4e-59 232.3 124 85.5
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 9.2e-59 231.5 124 83.9
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 1.2e-58 231.1 124 84.7
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 2.7e-58 229.9 124 84.7
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.7e-57 227.3 124 83.9
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 3.6e-55 219.5 124 82.3
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 3.6e-55 219.5 124 82.3
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 5.2e-54 215.7 125 80.0
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 5.8e-53 212.2 123 76.4
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 2.9e-52 209.9 117 79.5
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 1.4e-51 207.6 117 79.5
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 7.1e-51 205.3 109 83.5
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 1.3e-49 201.1 144 68.8
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.7e-44 184.1 101 78.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 3.2e-35 153.3 89 74.2
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 4.8e-31 139.4 243 36.2
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 4.8e-31 139.4 69 91.3
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 9.9e-29 131.7 80 75.0
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 4.2e-27 126.3 71 81.7
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.5e-26 123.2 66 86.4
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.4e-22 111.3 71 74.6
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 3.2e-19 100.1 66 72.7
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 5.1e-17 92.8 49 83.7
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 2.8e-15 87.0 47 80.9
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 1.7e-12 77.8 40 85.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 3.5e-10 70.1 34 88.2
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 3.0e-09 67.0 56 58.9


User provided reference genes

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