Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-34 149.4 75 100.0
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.4e-28 127.5 75 81.3
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.2e-24 115.2 75 74.7
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 1.1e-23 112.8 75 70.7
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.4e-23 112.5 75 72.0
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.6e-22 107.8 73 71.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.1e-22 107.1 66 77.3
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.0e-21 106.3 68 73.5
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.9e-21 104.4 73 69.9
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.6e-20 101.7 75 65.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.4e-20 100.9 74 63.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 7.4e-20 100.1 67 68.7
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.3e-19 99.4 65 70.8
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.2e-19 98.6 82 58.5
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.8e-19 98.2 67 68.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.8e-19 97.4 68 64.7
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 6.3e-19 97.1 80 58.8
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.8e-18 95.5 75 60.0
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.8e-18 95.5 66 65.2
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.8e-18 95.5 66 65.2
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.1e-18 94.7 72 62.5
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.2e-17 92.8 69 62.3
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.6e-17 92.4 64 68.8
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.6e-17 91.7 72 59.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.5e-17 91.3 68 69.1
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 4.5e-17 90.9 61 67.2
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 5.9e-17 90.5 74 58.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 7.7e-17 90.1 72 59.7
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.7e-17 90.1 66 63.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-16 88.6 68 61.8
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 6.5e-16 87.0 76 59.2
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-16 87.0 76 59.2
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-16 87.0 76 59.2
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 6.5e-16 87.0 76 59.2
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.5e-16 87.0 76 59.2
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.5e-16 87.0 61 63.9
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 6.5e-16 87.0 73 57.5
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.5e-16 87.0 72 59.7
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-15 86.3 71 57.7
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-15 86.3 71 57.7
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.1e-15 86.3 68 61.8
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.9e-15 85.5 71 59.2
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.9e-15 85.5 71 57.7
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.9e-15 85.5 74 54.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 3.2e-15 84.7 67 61.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.5e-15 84.0 72 59.7
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 5.5e-15 84.0 68 58.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 5.5e-15 84.0 66 62.1
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 7.2e-15 83.6 69 60.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.2e-14 82.8 69 58.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.2e-14 82.8 67 56.7
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.2e-14 82.8 67 56.7
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-14 82.4 76 56.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.7e-14 81.6 63 63.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.6e-14 81.3 65 56.9
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 8.0e-14 80.1 65 56.9
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.0e-13 79.7 76 53.9
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.8e-13 79.0 76 52.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.3e-13 78.6 64 53.1
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 3.0e-13 78.2 76 53.9
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 3.0e-13 78.2 76 53.9
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 3.0e-13 78.2 76 53.9
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.0e-13 77.8 76 53.9
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 5.2e-13 77.4 76 53.9
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 5.2e-13 77.4 56 62.5
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 5.2e-13 77.4 56 62.5
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 6.8e-13 77.0 76 53.9
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 6.8e-13 77.0 76 53.9
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 6.8e-13 77.0 76 53.9
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 8.8e-13 76.6 76 52.6
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 8.8e-13 76.6 76 52.6
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 8.8e-13 76.6 76 52.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.8e-13 76.6 69 53.6
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 8.8e-13 76.6 62 58.1
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.2e-12 76.3 76 52.6
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-12 76.3 63 58.7
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-12 75.9 76 52.6
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.5e-12 75.9 76 52.6
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.5e-12 75.9 68 50.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.0e-12 75.5 48 75.0
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 2.6e-12 75.1 76 50.0
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.4e-12 74.7 61 57.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.4e-12 74.3 48 75.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.7e-12 73.9 63 55.6
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 7.5e-12 73.6 72 48.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 9.7e-12 73.2 62 56.5
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.2e-11 72.0 67 53.7
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.2e-11 72.0 69 50.7
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 2.8e-11 71.6 64 51.6
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.8e-11 71.6 66 54.5
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.8e-11 71.6 66 54.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.8e-11 71.6 60 56.7
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 2.8e-11 71.6 62 58.1
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.7e-11 71.2 64 54.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 6.3e-11 70.5 61 54.1
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 8.3e-11 70.1 74 47.3
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 8.3e-11 70.1 66 50.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.1e-10 69.7 63 52.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.1e-10 69.7 64 46.9
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.4e-10 69.3 65 52.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.4e-10 69.3 62 51.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.8e-10 68.9 64 51.6
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.8e-10 68.9 58 53.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.4e-10 68.6 65 47.7
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.1e-10 68.2 65 50.8
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.1e-10 67.8 60 55.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 4.1e-10 67.8 67 49.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 5.3e-10 67.4 60 53.3
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.1e-10 66.6 67 50.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.1e-10 66.6 62 53.2
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.2e-09 66.2 62 51.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.0e-09 65.5 57 52.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-09 65.5 62 53.2
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.0e-09 65.5 62 50.0
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.7e-09 65.1 74 43.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.7e-09 65.1 74 43.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.7e-09 65.1 62 53.2
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.5e-09 64.7 70 44.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 5.9e-09 63.9 60 53.3
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 5.9e-09 63.9 61 50.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.7e-09 63.5 75 46.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.7e-09 63.5 66 45.5
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 7.7e-09 63.5 62 46.8
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.0e-08 63.2 66 50.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-08 62.4 62 51.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-08 62.4 62 51.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-08 62.4 62 51.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.7e-08 62.4 62 51.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-08 62.0 62 51.6
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-08 61.6 66 48.5
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.9e-08 61.6 66 45.5
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 2.9e-08 61.6 62 48.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.8e-08 61.2 60 48.3
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.8e-08 61.2 48 62.5
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-08 60.8 62 50.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-08 60.8 62 50.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 5.0e-08 60.8 76 40.8
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 6.5e-08 60.5 62 48.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 6.5e-08 60.5 62 48.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 6.5e-08 60.5 62 48.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 6.5e-08 60.5 67 43.3
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 8.5e-08 60.1 61 49.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 8.5e-08 60.1 62 48.4
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.1e-07 59.7 63 49.2
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.1e-07 59.7 60 48.3
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.1e-07 59.7 62 50.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 46.8
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 46.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 48.4
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 48.4
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 48.4
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 48.4
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 48.4
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.5e-07 59.3 69 43.5
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-07 59.3 62 50.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 1.9e-07 58.9 62 48.4
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.9e-07 58.9 66 47.0
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.5e-07 58.5 61 45.9
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 2.5e-07 58.5 66 42.4
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.2e-07 58.2 61 45.9
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 3.2e-07 58.2 61 45.9
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 3.2e-07 58.2 51 49.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 4.2e-07 57.8 62 48.4
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 4.2e-07 57.8 64 45.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 4.2e-07 57.8 61 49.2
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 9.4e-07 56.6 62 45.2
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 9.4e-07 56.6 62 43.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.2e-06 56.2 62 43.5
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.6e-06 55.8 62 41.9
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.1e-06 55.5 57 49.1
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.1e-06 55.5 62 45.2
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.6e-06 54.7 66 45.5
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.6e-06 54.7 67 43.3
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 6.1e-06 53.9 62 40.3


User provided reference genes

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