Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.4e-148 529.6 279 100.0
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 3.4e-118 428.7 283 83.7
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 7.4e-105 384.4 283 77.4
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.3e-93 347.1 280 71.8
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.3e-92 340.9 289 68.5
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 9.3e-92 340.9 284 68.3
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.2e-91 340.5 291 67.0
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.6e-91 340.1 284 69.4
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 2.1e-91 339.7 284 69.4
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.9e-90 335.5 262 71.0
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.1e-89 334.0 258 72.9
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.1e-89 334.0 278 70.5
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.9e-89 333.2 286 67.5
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 2.8e-88 329.3 287 68.6
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 3.7e-88 328.9 271 68.6
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.8e-88 328.6 253 70.4
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 6.3e-88 328.2 279 67.7
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 1.1e-87 327.4 281 67.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.1e-87 327.4 281 69.0
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.0e-85 320.9 263 70.7
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.9e-85 319.3 285 68.1
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 5.0e-85 318.5 283 65.7
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 8.5e-85 317.8 282 66.3
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 1.1e-84 317.4 297 64.0
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.4e-84 317.0 253 70.0
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 3.2e-84 315.8 265 67.2
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 9.3e-84 314.3 280 66.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 9.3e-84 314.3 280 66.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-83 313.9 280 66.1
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 2.1e-83 313.2 289 65.1
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 3.6e-83 312.4 252 68.7
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 6.1e-83 311.6 289 63.7
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.0e-82 309.3 279 63.4
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 3.9e-82 308.9 281 64.1
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 5.1e-82 308.5 286 63.6
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 6.7e-82 308.1 296 61.8
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 6.7e-82 308.1 273 64.8
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.5e-81 306.2 279 63.1
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.5e-81 306.2 279 63.1
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 3.3e-81 305.8 283 65.4
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.3e-81 305.8 261 68.6
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 4.3e-81 305.4 288 64.2
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.2e-80 303.1 287 62.4
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 8.2e-80 301.2 286 61.5
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 8.2e-80 301.2 264 66.7
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 8.2e-80 301.2 264 66.7
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 8.2e-80 301.2 288 63.2
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 5.3e-79 298.5 283 61.1
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 5.3e-79 298.5 283 61.1
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 5.3e-79 298.5 283 61.1
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 5.3e-79 298.5 279 62.4
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.5e-78 297.0 284 63.0
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.6e-78 296.2 277 62.1
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 4.5e-78 295.4 221 74.7
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 1.0e-77 294.3 283 61.8
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 1.7e-77 293.5 283 61.5
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.4e-76 290.4 284 60.6
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 1.9e-76 290.0 200 76.0
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.9e-76 290.0 251 65.3
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 5.5e-76 288.5 283 61.1
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 7.2e-76 288.1 319 59.9
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.6e-75 285.4 288 60.8
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.0e-74 284.3 250 65.2
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 3.0e-74 282.7 267 61.0
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 5.1e-74 282.0 254 63.0
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.5e-73 280.4 288 59.4
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.0e-73 280.0 277 62.5
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 4.4e-73 278.9 221 68.8
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 5.7e-73 278.5 285 59.6
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 5.7e-73 278.5 282 57.4
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 7.4e-73 278.1 282 57.4
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.3e-72 277.3 248 64.9
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 2.8e-72 276.2 281 59.1
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.8e-72 276.2 277 61.0
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 2.8e-72 276.2 264 60.6
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 3.7e-72 275.8 279 58.4
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 6.3e-72 275.0 284 58.5
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 6.3e-72 275.0 267 59.6
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 6.3e-72 275.0 222 68.5
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 8.2e-72 274.6 218 68.8
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.8e-71 273.5 284 59.5
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 4.1e-71 272.3 279 58.8
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 4.1e-71 272.3 271 60.1
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 6.9e-71 271.6 281 56.6
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-70 270.8 280 57.9
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.0e-70 270.0 292 57.2
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.6e-70 269.6 280 58.2
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.4e-70 269.2 245 62.0
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 4.5e-70 268.9 281 58.0
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 7.7e-70 268.1 284 56.3
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 2.9e-69 266.2 281 57.7
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.9e-69 266.2 235 65.5
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 5.0e-69 265.4 281 57.7
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.9e-68 263.5 251 63.3
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.2e-68 262.7 283 56.5
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.2e-68 262.7 283 56.5
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 4.2e-68 262.3 263 61.6
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.2e-68 262.3 286 58.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 5.5e-68 261.9 219 65.8
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 5.5e-68 261.9 262 60.7
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 7.2e-68 261.5 287 57.1
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 3.6e-67 259.2 290 56.6
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 7.9e-67 258.1 189 72.0
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 1.0e-66 257.7 151 86.8
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 1.1e-65 254.2 171 75.4
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.3e-65 252.7 280 54.6
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 4.4e-65 252.3 342 49.4
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 2.2e-64 250.0 295 55.6
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 3.1e-63 246.1 246 59.3
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 2.9e-61 239.6 171 73.1
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 4.2e-60 235.7 282 53.2
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 2.7e-59 233.0 287 52.3
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 3.6e-59 232.6 200 63.5
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 2.3e-58 229.9 247 57.9
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 9.7e-57 224.6 255 52.9
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.7e-56 223.8 215 58.6
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 9.1e-55 218.0 187 64.2
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 1.6e-54 217.2 279 52.7
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.2e-53 213.4 136 79.4
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 2.7e-51 206.5 188 58.0
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.0e-50 204.5 288 48.3
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.0e-50 202.6 287 48.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 6.8e-50 201.8 235 50.2
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-47 194.1 233 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.0e-46 190.3 193 53.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.0e-46 190.3 216 53.2
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 2.5e-44 183.3 109 87.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.4e-42 177.6 188 50.0
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.4e-41 172.9 114 78.1
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 3.7e-40 169.5 104 80.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 6.3e-40 168.7 205 45.4
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.3e-36 156.0 234 49.1
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 2.1e-35 153.7 179 48.6
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.4e-33 146.0 104 76.9
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 1.7e-29 134.0 180 50.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.2e-27 127.9 181 38.1
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.8e-27 126.7 67 92.5
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.4e-26 124.4 158 53.2
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.3e-26 123.6 132 47.7
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 7.5e-25 118.6 91 64.8
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.6e-22 109.4 146 53.4
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 9.5e-20 101.7 159 36.5
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.6e-19 100.9 82 67.1
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 7.1e-15 85.5 74 62.2
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 1.3e-13 81.3 147 30.6
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 4.3e-12 76.3 123 44.7
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.8e-10 70.9 56 69.6
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 4.0e-10 69.7 122 43.4
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.8e-10 68.9 135 40.0
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.4e-09 66.6 225 28.4
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 9.9e-09 65.1 129 33.3
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.3e-08 64.7 194 29.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.2e-08 63.9 221 27.6
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 3.8e-08 63.2 136 32.4
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.8e-08 63.2 177 29.9
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 6.4e-08 62.4 251 27.5
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 6.4e-08 62.4 216 29.6
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 6.4e-08 62.4 210 29.5
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 8.4e-08 62.0 220 30.5
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 1.1e-07 61.6 50 66.0
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.4e-07 61.2 249 28.1
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 1.4e-07 61.2 33 87.9
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.4e-07 61.2 210 29.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.9e-07 60.8 219 27.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.4e-07 60.5 194 27.3
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 4.1e-07 59.7 177 29.9
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 4.1e-07 59.7 225 28.9
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 4.1e-07 59.7 129 29.5
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 7.1e-07 58.9 250 26.4
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 7.1e-07 58.9 203 28.1
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.1e-07 58.9 184 27.2
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 7.1e-07 58.9 225 28.0
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 9.2e-07 58.5 146 28.8
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 9.2e-07 58.5 194 23.7
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 9.2e-07 58.5 202 26.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-06 58.2 162 27.2
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.6e-06 57.8 156 28.8
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.7e-06 57.0 234 23.9
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.5e-06 56.6 208 26.0
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.6e-06 56.2 198 28.3
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 6.0e-06 55.8 195 26.2
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 7.8e-06 55.5 65 44.6
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 7.8e-06 55.5 65 44.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 7.8e-06 55.5 203 27.1
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 7.8e-06 55.5 203 27.1
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 7.8e-06 55.5 226 27.9


User provided reference genes

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