Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 0.0e+00 1090.5 542 100.0
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 2.7e-252 875.2 539 80.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.3e-235 819.7 526 77.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 8.6e-235 817.0 543 75.0
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.3e-234 814.7 518 77.2
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.1e-232 808.5 521 75.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 7.1e-229 797.3 540 72.8
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.7e-228 795.4 541 73.2
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 4.6e-228 794.7 536 72.9
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.7e-227 792.7 540 72.8
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 3.9e-227 791.6 540 72.2
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.5e-226 789.6 510 74.5
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 3.3e-226 788.5 540 72.4
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 5.6e-226 787.7 541 72.3
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 1.4e-224 783.1 517 75.0
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 1.4e-224 783.1 541 71.3
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-222 776.5 541 70.6
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 8.4e-222 773.9 541 70.6
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 8.4e-222 773.9 538 71.7
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.2e-221 771.9 549 70.9
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 5.4e-221 771.2 540 71.3
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-220 769.6 548 69.7
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.0e-219 766.9 539 70.3
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.8e-217 758.1 555 69.0
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 6.2e-217 757.7 540 70.6
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 4.0e-216 755.0 541 67.7
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.2e-215 753.4 523 70.0
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 3.4e-215 751.9 552 68.8
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 2.2e-214 749.2 541 67.7
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 2.9e-214 748.8 522 71.6
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 4.9e-214 748.0 539 67.3
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 2.4e-213 745.7 543 67.4
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 1.2e-212 743.4 543 67.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 3.9e-211 738.4 541 68.2
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 4.3e-210 734.9 509 70.3
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 4.3e-210 734.9 543 66.9
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 5.6e-210 734.6 541 66.2
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 7.3e-210 734.2 545 66.4
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.3e-209 733.4 529 67.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.6e-209 733.0 537 67.8
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.6e-209 733.0 543 67.0
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.6e-209 733.0 523 69.4
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 2.1e-209 732.6 524 70.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 1.8e-208 729.6 521 67.4
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 2.4e-208 729.2 532 67.1
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 3.1e-208 728.8 513 70.0
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 4.0e-208 728.4 522 67.2
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 6.9e-208 727.6 542 66.4
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 9.0e-208 727.2 539 66.2
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 9.0e-208 727.2 505 70.7
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.2e-207 726.9 542 67.9
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 4.5e-207 724.9 537 65.7
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.3e-206 723.4 506 69.6
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 4.9e-206 721.5 540 65.9
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 4.9e-206 721.5 515 67.4
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.4e-205 719.9 539 64.0
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.2e-205 718.8 512 68.4
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 6.0e-204 714.5 487 71.3
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.3e-203 713.4 539 63.6
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.8e-203 713.0 529 66.2
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 3.0e-203 712.2 524 67.7
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 5.1e-203 711.4 509 68.0
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 8.7e-203 710.7 505 69.1
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.1e-202 710.3 508 67.1
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.9e-202 709.5 556 64.4
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 2.5e-202 709.1 512 67.2
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 7.4e-202 707.6 521 67.2
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 9.6e-202 707.2 527 67.7
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 9.6e-202 707.2 502 70.7
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 1.3e-201 706.8 520 67.5
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 2.8e-201 705.7 514 67.9
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 6.2e-201 704.5 513 67.6
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.2e-201 704.5 514 67.9
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 8.1e-201 704.1 499 69.7
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.3e-200 701.4 513 67.4
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 5.3e-200 701.4 517 66.0
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.6e-199 699.1 499 67.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 7.6e-199 697.6 523 66.7
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 3.2e-197 692.2 462 73.8
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.7e-196 689.1 525 66.3
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 3.3e-194 682.2 485 68.9
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.0e-190 670.6 484 66.9
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.0e-190 670.6 490 67.6
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 2.5e-189 666.0 504 64.1
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 9.3e-189 664.1 510 63.9
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.2e-188 663.7 462 68.8
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 2.3e-187 659.4 419 78.5
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 6.5e-182 641.3 554 58.5
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.6e-175 619.4 417 72.9
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 2.5e-173 612.8 491 61.3
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 4.7e-172 608.6 500 62.0
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.3e-166 590.5 426 66.4
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.5e-165 586.3 613 52.2
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 4.2e-165 585.5 375 76.8
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 6.1e-164 581.6 575 50.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.3e-163 579.7 417 70.0
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.7e-159 566.2 552 52.2
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.7e-159 566.2 552 52.2
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.4e-155 553.9 390 70.8
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 6.8e-155 551.6 474 55.7
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 3.7e-153 545.8 377 70.3
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 2.5e-149 533.1 346 74.6
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.6e-148 530.4 439 60.8
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 9.8e-146 521.2 386 65.3
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 4.9e-145 518.8 383 68.7
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.3e-134 484.2 486 56.2
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.4e-128 464.2 543 49.7
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 6.6e-126 455.3 529 51.4
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.6e-124 449.5 538 48.3
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.2e-116 424.5 432 54.2
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 8.4e-113 411.8 282 73.4
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 2.1e-87 327.4 456 39.9
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 2.2e-81 307.4 225 67.6
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.4e-67 261.5 237 55.7
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 4.1e-67 260.0 143 90.2
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.0e-61 241.1 190 65.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-51 208.0 199 56.8
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 4.2e-48 196.8 160 60.0
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.1e-47 194.5 129 67.4
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 7.5e-45 186.0 124 68.5
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.8e-44 184.1 156 57.7
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 8.2e-44 182.6 496 29.4
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 7.0e-43 179.5 149 60.4
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 2.0e-29 134.8 90 70.0
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 3.7e-28 130.6 107 59.8
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 3.7e-28 130.6 107 59.8
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 3.7e-28 130.6 107 59.8
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.8e-27 128.3 130 54.6
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.4e-21 107.5 75 64.0
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 7.5e-21 106.3 86 61.6
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.2e-15 89.0 74 56.8
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.2e-10 72.4 288 27.1
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 1.0e-09 69.3 81 49.4
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 6.2e-07 60.1 303 24.8
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 6.2e-07 60.1 303 24.8
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.1e-06 59.3 303 24.8


User provided reference genes

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