Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.3e-197 693.0 382 100.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.8e-177 624.4 376 90.7
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 5.8e-177 624.4 374 93.3
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 5.8e-177 624.4 376 92.0
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 2.4e-175 619.0 374 92.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 7.8e-174 614.0 379 87.9
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.0e-173 613.6 374 90.9
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 2.5e-172 609.0 378 88.6
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 7.3e-172 607.4 388 85.8
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.2e-171 606.7 386 88.6
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.4e-170 602.4 386 85.5
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 3.1e-170 602.1 366 89.6
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.0e-170 601.7 376 89.4
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.8e-170 600.9 376 89.6
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.0e-169 599.4 376 89.4
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 3.4e-169 598.6 367 91.6
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 3.4e-169 598.6 372 87.1
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 4.4e-169 598.2 376 86.2
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.3e-168 596.7 379 87.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 8.4e-168 594.0 375 86.7
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 8.4e-168 594.0 384 85.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.4e-167 593.2 389 83.5
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.4e-167 592.4 380 83.2
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 2.4e-167 592.4 378 84.9
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 3.2e-167 592.0 378 88.4
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.2e-167 592.0 388 86.3
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 5.4e-167 591.3 375 86.4
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 5.4e-167 591.3 374 88.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.2e-167 590.5 386 83.4
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.7e-166 589.0 376 85.1
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.0e-165 587.0 376 84.6
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.1e-164 583.6 370 85.7
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 1.6e-163 579.7 391 81.3
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.6e-163 579.7 373 85.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 2.1e-163 579.3 377 84.4
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 4.8e-163 578.2 370 84.6
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 8.1e-163 577.4 386 82.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.1e-162 575.5 376 87.0
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 6.9e-162 574.3 367 86.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 4.4e-161 571.6 362 88.4
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 5.8e-161 571.2 390 79.2
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 8.4e-160 567.4 385 83.9
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.1e-159 567.0 386 82.6
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.0e-158 561.2 381 80.3
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.7e-157 559.7 389 82.0
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.1e-156 557.0 389 81.7
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.6e-155 552.0 365 81.9
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.6e-155 552.0 389 77.1
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.4e-154 550.1 376 81.4
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.8e-154 549.7 354 83.3
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 5.3e-154 548.1 389 79.4
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 9.0e-154 547.4 387 81.4
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.0e-153 546.2 351 86.6
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.6e-153 545.8 376 81.1
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 7.6e-153 544.3 366 83.6
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.9e-153 543.9 376 81.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.9e-152 542.3 376 78.5
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 3.8e-152 542.0 350 84.3
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 6.4e-152 541.2 367 82.8
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 6.4e-152 541.2 372 80.4
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 8.4e-152 540.8 388 79.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 8.4e-152 540.8 388 79.4
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.4e-151 540.0 387 79.6
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 3.2e-151 538.9 389 78.9
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 9.3e-151 537.3 366 83.1
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.1e-150 536.2 376 78.5
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.5e-150 535.4 363 82.9
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 6.0e-150 534.6 365 82.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.3e-149 532.7 363 82.6
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 3.9e-149 531.9 384 78.1
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.7e-149 531.2 344 84.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 6.7e-149 531.2 371 80.6
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 8.7e-149 530.8 367 81.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.3e-148 528.9 346 82.7
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.6e-147 526.6 343 85.4
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.6e-147 526.6 410 76.3
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.8e-147 525.8 354 83.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.8e-147 525.8 387 79.3
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.8e-147 525.0 367 79.8
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.8e-146 523.1 342 85.1
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 3.1e-146 522.3 342 85.1
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 6.9e-146 521.2 381 80.6
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.0e-145 519.6 358 81.6
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.6e-145 519.2 373 78.3
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-145 518.5 369 79.9
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.8e-145 518.1 416 72.4
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 7.6e-145 517.7 367 79.8
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 3.5e-142 508.8 367 78.7
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.6e-142 508.4 350 81.4
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 3.0e-141 505.8 351 82.6
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-140 503.1 319 90.0
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.4e-140 501.1 374 77.3
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 2.4e-138 496.1 368 77.7
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 3.1e-138 495.7 352 78.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.9e-138 494.6 376 73.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 6.9e-138 494.6 364 76.9
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 9.0e-138 494.2 363 79.3
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.4e-137 492.3 372 76.1
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.5e-137 491.9 384 72.1
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 6.5e-136 488.0 355 77.2
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 2.1e-134 483.0 386 70.7
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.7e-134 482.6 377 73.7
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.0e-133 480.7 372 72.3
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.3e-133 480.3 360 75.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 3.0e-133 479.2 372 72.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.1e-132 477.2 371 75.5
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.3e-132 475.3 364 75.5
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 6.3e-131 471.5 369 73.7
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 8.2e-131 471.1 361 75.1
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-130 469.9 361 75.3
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.8e-130 469.9 361 75.3
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.6e-129 466.1 342 77.8
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.3e-128 463.8 352 75.9
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.9e-128 462.6 379 72.3
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.7e-126 456.1 369 67.8
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 8.2e-123 444.5 353 68.6
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.4e-122 443.0 379 70.4
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 6.9e-122 441.4 330 76.1
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.7e-118 429.5 316 78.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.1e-116 424.1 388 66.5
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.5e-116 423.7 365 62.5
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 5.7e-116 421.8 292 84.2
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.3e-115 420.6 268 85.1
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-114 416.0 361 62.0
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.7e-113 411.4 290 79.0
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.8e-109 397.9 368 59.8
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.0e-106 388.3 329 63.8
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.0e-104 384.4 314 64.3
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.9e-104 382.9 303 76.9
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 3.8e-104 382.5 267 79.0
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 9.4e-103 377.9 361 59.3
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.6e-102 377.1 218 94.0
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 5.7e-100 368.6 287 73.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.7e-99 367.1 346 57.5
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-98 362.8 374 54.5
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 5.2e-93 345.5 347 59.4
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 8.8e-93 344.7 310 65.8
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.7e-89 333.2 224 84.4
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-70 270.0 172 84.3
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.9e-50 204.1 131 85.5
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 7.8e-49 198.7 140 80.0
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 1.5e-47 194.5 119 87.4
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.6e-46 189.9 142 78.2
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.5e-44 184.5 141 75.9
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.8e-35 153.3 97 82.5
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.8e-30 136.3 105 69.5
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.2e-27 127.5 79 77.2
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 3.8e-27 126.7 70 84.3
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 5.5e-26 122.9 70 82.9
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.3e-23 113.6 81 77.8
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.7e-22 110.2 98 53.1
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-18 98.6 81 67.9
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.9e-18 97.8 130 50.0
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 3.2e-18 97.1 58 93.1
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.3e-16 91.7 53 96.2
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-15 87.4 93 53.8
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 6.3e-14 82.8 74 55.4
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.5e-12 78.2 97 52.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.6e-12 77.4 42 90.5
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.4e-12 77.0 74 64.9
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 4.5e-12 76.6 99 52.5
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.4e-08 65.1 38 94.7
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 8.8e-08 62.4 47 66.0
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.5e-07 60.8 262 25.6


User provided reference genes

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