Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.5e-105 386.3 211 100.0
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.2e-76 288.9 211 73.0
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 3.6e-64 248.8 210 66.2
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.2e-61 239.6 217 68.7
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 4.8e-48 195.3 202 53.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 4.1e-47 192.2 217 53.0
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 8.4e-45 184.5 200 51.0
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 4.8e-40 168.7 198 47.0
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.8e-39 166.8 196 50.0
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 5.9e-38 161.8 206 51.5
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 1.7e-37 160.2 198 47.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.8e-37 159.1 196 48.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 5.0e-37 158.7 194 49.0
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.1e-35 153.3 198 43.9
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 1.1e-33 147.5 190 47.4
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.5e-33 146.4 192 46.9
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 9.7e-33 144.4 206 46.6
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 3.1e-31 139.4 188 45.7
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 4.1e-31 139.0 197 47.2
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.2e-30 137.5 219 43.8
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.6e-30 136.3 99 65.7
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.0e-29 134.4 197 46.2
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 1.4e-28 130.6 214 43.9
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 9.4e-28 127.9 228 38.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 3.6e-27 125.9 195 42.1
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 6.1e-27 125.2 196 42.9
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 2.3e-26 123.2 196 41.3
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 5.1e-26 122.1 154 49.4
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.5e-25 120.6 186 41.9
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 1.5e-25 120.6 221 40.3
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 2.6e-25 119.8 225 38.7
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 9.7e-25 117.9 190 40.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.7e-24 117.1 198 41.4
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 8.2e-24 114.8 187 48.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 2.4e-23 113.2 192 41.7
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 2.4e-23 113.2 189 39.7
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 4.1e-23 112.5 177 42.9
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.3e-23 112.1 192 39.1
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.2e-22 110.9 136 47.1
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 4.5e-22 109.0 185 40.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 5.9e-22 108.6 109 49.5
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.9e-22 108.6 191 38.7
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 2.2e-21 106.7 193 39.9
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 5.0e-21 105.5 205 37.1
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 6.5e-21 105.1 87 63.2
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.2e-20 102.8 135 44.4
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 4.2e-20 102.4 85 56.5
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 5.5e-20 102.1 199 38.7
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.0e-18 97.8 80 58.8
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 1.0e-18 97.8 198 33.8
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 1.4e-18 97.4 84 58.3
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.4e-18 97.4 196 35.2
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 2.3e-18 96.7 86 59.3
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.3e-18 96.7 84 58.3
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 2.3e-18 96.7 185 37.3
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.1e-17 94.4 85 60.0
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.1e-17 94.4 85 60.0
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.1e-17 94.4 99 46.5
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.5e-17 94.0 67 68.7
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.5e-17 94.0 87 58.6
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 4.4e-17 92.4 67 71.6
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 7.5e-17 91.7 84 56.0
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 7.5e-17 91.7 84 56.0
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 7.5e-17 91.7 86 57.0
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 9.7e-17 91.3 84 54.8
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 2.8e-16 89.7 84 56.0
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 2.8e-16 89.7 83 59.0
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.7e-16 89.4 83 56.6
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 3.7e-16 89.4 113 47.8
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 3.7e-16 89.4 113 47.8
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 3.7e-16 89.4 90 54.4
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 3.7e-16 89.4 186 34.4
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.8e-15 87.0 113 47.8
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.8e-15 87.0 113 47.8
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.4e-15 86.7 84 57.1
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.4e-15 86.7 83 55.4
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 2.4e-15 86.7 82 54.9
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 4.1e-15 85.9 179 35.8
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 4.1e-15 85.9 84 53.6
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 4.1e-15 85.9 78 56.4
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 9.1e-15 84.7 89 55.1
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.6e-14 84.0 87 49.4
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 2.0e-14 83.6 207 30.4
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.6e-14 83.2 87 49.4
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 3.5e-14 82.8 111 45.0
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 5.9e-14 82.0 102 45.1
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 7.7e-14 81.6 84 52.4
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 7.7e-14 81.6 82 52.4
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.3e-13 80.9 184 40.2
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 1.3e-13 80.9 94 48.9
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 2.9e-13 79.7 112 40.2
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 5.0e-13 79.0 94 46.8
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 1.9e-12 77.0 102 37.3
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 4.2e-12 75.9 82 46.3
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.2e-12 75.9 82 52.4
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 9.4e-12 74.7 82 50.0
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 9.4e-12 74.7 82 50.0
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 9.4e-12 74.7 82 50.0
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.2e-11 74.3 87 47.1
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 1.6e-11 73.9 79 50.6
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.7e-11 73.2 122 39.3
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 3.6e-11 72.8 98 41.8
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 4.7e-11 72.4 84 45.2
Ciclev10009553m.g Citrus clementina HOM05D007262 ORTHO05D008524 6.1e-11 72.0 173 34.7
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 6.1e-11 72.0 171 43.9
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 8.0e-11 71.6 105 42.9
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 8.0e-11 71.6 68 52.9
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 1.8e-10 70.5 105 42.9
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 3.0e-10 69.7 104 41.3
Atru.chr7.610 Acer truncatum HOM05D015664 ORTHO05D008524 6.8e-10 68.6 192 35.9
COL.COLO4_32474 Corchorus olitorius HOM05D018436 ORTHO05D025173 2.6e-09 66.6 73 47.9
Psat4g169040 Pisum sativum HOM05D007262 ORTHO05D008524 2.6e-09 66.6 165 37.0
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 3.4e-09 66.2 75 44.0
ClCG06G013380 Citrullus lanatus HOM05D015664 ORTHO05D008524 4.4e-09 65.9 103 39.8
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 9.8e-09 64.7 79 40.5
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 1.7e-08 63.9 75 42.7
Lalb_Chr12g0199441 Lupinus albus HOM05D007262 ORTHO05D008524 3.7e-08 62.8 159 32.7
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 4.8e-08 62.4 71 45.1
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 6.3e-08 62.0 80 40.0
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.3e-08 62.0 79 39.2
SEGI_15643 Sequoiadendron giganteum HOM05D039678 ORTHO05D037599 6.3e-08 62.0 85 40.0
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 1.1e-07 61.2 158 32.9
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.1e-07 61.2 76 39.5
ATR0580G212 Amborella trichopoda HOM05D007262 ORTHO05D008524 1.4e-07 60.8 197 29.4
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.4e-07 60.8 70 42.9
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 1.4e-07 60.8 80 40.0
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 1.4e-07 60.8 81 39.5
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.8e-07 60.5 82 39.0
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 1.8e-07 60.5 79 39.2
Sed0025640 Sechium edule HOM05D015664 ORTHO05D008524 1.8e-07 60.5 102 37.3
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.1e-07 59.7 76 42.1
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.1e-07 59.7 76 42.1
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.1e-07 59.7 76 42.1
MBI16_g25207_MAGBIO Magnolia biondii HOM05D007262 ORTHO05D008524 3.1e-07 59.7 78 42.3
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 3.1e-07 59.7 87 36.8
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 4.1e-07 59.3 96 33.3
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 4.1e-07 59.3 71 40.8
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 4.1e-07 59.3 89 40.4
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 5.4e-07 58.9 66 47.0
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 5.4e-07 58.9 87 39.1
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 5.4e-07 58.9 79 39.2
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 5.4e-07 58.9 77 39.0
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 7.0e-07 58.5 77 40.3
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 9.1e-07 58.2 82 36.6
Gohir.A08G084000 Gossypium hirsutum HOM05D018436 ORTHO05D025173 9.1e-07 58.2 105 33.3
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 1.2e-06 57.8 71 42.3
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.2e-06 57.8 71 42.3
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.2e-06 57.8 77 40.3
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.2e-06 57.8 74 41.9
Duzib128G1044 Durio zibethinus HOM05D015664 ORTHO05D008524 1.6e-06 57.4 106 35.8
Gohir.D08G093600 Gossypium hirsutum HOM05D018436 ORTHO05D025173 1.6e-06 57.4 105 33.3
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.4 81 38.3
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.4 76 40.8
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.6e-06 57.4 77 41.6
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.6e-06 57.4 89 38.2
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 2.0e-06 57.0 81 37.0
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 2.0e-06 57.0 68 41.2
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 2.7e-06 56.6 67 37.3
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 2.7e-06 56.6 81 39.5
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 2.7e-06 56.6 74 40.5
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 2.7e-06 56.6 77 39.0
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.5e-06 56.2 77 40.3
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 3.5e-06 56.2 70 41.4
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 4.5e-06 55.8 88 35.2
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 4.5e-06 55.8 86 39.5
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.5e-06 55.8 71 39.4
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.5e-06 55.8 75 38.7
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 4.5e-06 55.8 92 31.5
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 5.9e-06 55.5 75 37.3
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 5.9e-06 55.5 74 36.5
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 5.9e-06 55.5 75 37.3
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 5.9e-06 55.5 61 45.9
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 7.7e-06 55.1 96 32.3
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 7.7e-06 55.1 72 38.9
Gorai.004G099200 Gossypium raimondii HOM05D018436 ORTHO05D025173 7.7e-06 55.1 105 32.4
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 7.7e-06 55.1 74 39.2
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 7.7e-06 55.1 71 40.8
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 7.7e-06 55.1 64 45.3
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 7.7e-06 55.1 74 40.5
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 7.7e-06 55.1 72 41.7
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 7.7e-06 55.1 64 45.3


User provided reference genes

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