Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1630.9 812 100.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1441.4 813 87.7
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1411.4 875 81.4
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1255.7 817 75.6
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1216.4 820 73.3
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1205.3 821 72.6
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1167.5 816 71.4
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1166.0 811 71.5
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1162.1 815 71.3
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1161.0 816 71.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1159.8 816 70.0
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1159.1 816 69.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1153.3 816 69.5
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1151.3 816 69.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1150.2 816 70.6
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1146.7 786 72.1
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1142.9 815 69.8
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1131.3 817 69.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1130.5 819 70.0
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1122.8 815 69.2
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1108.2 816 67.8
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 0.0e+00 1106.3 817 68.2
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 0.0e+00 1101.3 816 67.5
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1099.3 818 67.8
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 0.0e+00 1097.4 816 67.4
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1092.8 818 67.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 5.6e-312 1074.3 822 67.0
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 5.6e-312 1073.9 817 66.3
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 7.9e-309 1063.5 816 65.9
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 5.1e-308 1060.8 814 65.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 4.3e-307 1057.7 816 64.6
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.8e-305 1052.4 841 64.4
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 3.1e-305 1051.6 816 65.4
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 9.1e-305 1050.0 816 64.2
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 813 65.4
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 5.9e-304 1047.3 824 63.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.8e-303 1044.6 814 65.4
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.1e-302 1043.1 816 65.1
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.2e-302 1041.2 814 65.4
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 7.9e-301 1036.9 853 61.8
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.4e-300 1036.2 814 63.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.8e-300 1035.8 814 64.7
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 5.1e-300 1034.2 814 63.6
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 6.7e-300 1033.9 810 62.7
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-299 1032.3 814 64.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.0e-299 1032.3 812 64.0
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.4e-299 1031.2 815 65.0
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.7e-298 1029.2 822 63.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.1e-297 1026.5 822 63.1
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 5.3e-297 1024.2 823 63.4
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 9.1e-297 1023.5 813 63.0
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.9e-296 1020.8 821 63.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 835 63.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 821 63.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.2e-294 1014.6 813 62.2
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.8e-292 1009.2 813 62.5
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.3e-292 1008.8 813 63.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 8.8e-292 1006.9 818 63.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.5e-291 1006.1 877 60.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.0e-291 1005.7 820 62.7
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 7.5e-291 1003.8 812 62.4
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 9.7e-291 1003.4 827 62.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.3e-290 1003.0 820 62.4
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.3e-290 1003.0 828 62.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.8e-290 1001.9 812 61.8
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 4.8e-290 1001.1 820 62.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 4.8e-290 1001.1 820 62.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 2.4e-289 998.8 814 62.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 6.5e-287 990.7 827 61.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.5e-287 990.7 819 61.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 6.5e-287 990.7 816 61.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.1e-286 989.9 812 61.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 4.0e-284 981.5 811 61.5
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 8.8e-284 980.3 813 61.6
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.2e-283 979.9 815 61.1
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.7e-282 976.1 816 61.3
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.2e-282 975.7 813 60.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.8e-282 975.3 816 61.3
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.8e-282 975.3 825 61.0
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.7e-282 974.9 816 61.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 6.5e-279 964.1 812 60.8
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 9.4e-278 960.3 829 61.2
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 2.0e-275 952.6 814 60.8
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.0e-272 942.6 814 60.3
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 5.2e-268 927.9 819 59.2
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 1.8e-260 902.9 811 56.8
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.9e-257 892.9 810 56.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.4e-257 892.5 812 56.4
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 7.1e-249 864.4 829 55.5
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.5e-248 862.1 627 66.5
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 1.0e-247 860.5 816 55.0
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.1e-246 857.1 584 72.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.3e-244 849.4 814 54.2
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.0e-244 848.6 818 54.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.8e-236 823.2 817 52.9
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.9e-234 815.1 817 52.6
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 7.8e-232 807.7 750 56.8
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.2e-226 789.6 538 70.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 6.4e-226 788.1 893 49.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 5.5e-209 731.9 814 48.6
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.7e-195 684.9 819 47.3
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 4.6e-192 675.6 821 47.1
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.2e-189 666.8 853 46.3
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.1e-188 664.5 461 70.3
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 6.5e-186 655.2 823 44.5
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 7.4e-182 641.7 821 46.4
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 7.2e-161 572.0 815 43.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 4.0e-159 566.2 844 38.7
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 5.7e-158 562.4 815 44.5
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.8e-157 560.1 678 46.6
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.2e-151 539.3 478 58.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.7e-150 535.8 590 50.7
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-148 531.2 822 42.1
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 6.6e-138 495.7 852 36.5
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 7.5e-134 482.3 339 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 3.7e-133 479.9 827 36.4
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 9.6e-121 438.7 845 34.2
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 3.0e-106 390.6 398 52.0
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.6e-99 368.2 674 33.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.9e-87 326.2 407 45.7
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.2e-67 262.3 746 29.8
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.6e-67 261.9 277 53.4
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.4e-66 258.8 276 53.6
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-66 258.5 276 53.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 8.2e-64 249.6 156 76.9
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.5e-54 217.6 213 54.5
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 7.7e-54 216.5 196 59.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 3.0e-50 204.5 841 24.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.6e-43 181.0 158 58.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.7e-40 171.0 623 26.8
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 4.3e-36 157.5 104 73.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 7.3e-36 156.8 132 55.3
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.7e-35 154.1 136 55.9
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 3.0e-21 108.2 97 60.8
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 3.3e-20 104.8 113 48.7
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 9.5e-20 103.2 113 48.7
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.2e-17 96.3 67 74.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.4e-15 88.6 63 66.7
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.0e-13 81.6 70 54.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.6e-13 80.1 90 46.7
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-10 72.4 46 73.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.1e-10 71.6 46 71.7
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 5.2e-10 70.9 97 45.4
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.8e-10 70.5 87 43.7
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 3.4e-09 68.2 44 75.0
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.6e-06 59.3 40 67.5
Lsat_1_v5_gn_7_93920 Lactuca sativa HOM05D004893 ORTHO05D232711 2.1e-06 58.9 82 47.6
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 4.6e-06 57.8 37 73.0
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 4.6e-06 57.8 37 73.0
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 4.6e-06 57.8 37 73.0


User provided reference genes

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