Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.1e-69 266.5 140 100.0
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.8e-60 235.3 146 84.2
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 7.6e-50 200.7 145 73.1
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 9.2e-48 193.7 144 71.5
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 3.5e-47 191.8 145 70.3
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 6.0e-47 191.0 160 68.1
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 7.8e-47 190.7 151 68.2
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.3e-46 189.1 150 68.0
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-45 186.4 150 67.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.9e-45 186.0 157 70.7
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 5.6e-45 184.5 149 67.8
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.2e-44 183.3 152 66.4
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.7e-44 181.4 155 66.5
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 6.2e-44 181.0 146 66.4
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-43 180.3 151 67.5
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.4e-43 179.9 155 65.8
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.8e-43 179.5 144 66.7
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.2e-43 177.9 146 66.4
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 8.9e-43 177.2 144 66.7
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.9e-43 177.2 153 66.0
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 2.2e-41 172.6 147 66.0
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 3.2e-40 168.7 147 65.3
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 4.2e-40 168.3 140 64.3
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 5.4e-40 167.9 157 61.1
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.6e-39 166.4 140 63.6
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.6e-39 166.4 140 63.6
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.6e-39 166.4 145 62.8
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.7e-39 165.6 143 62.2
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.7e-39 165.6 141 63.1
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 4.6e-39 164.9 147 62.6
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 6.0e-39 164.5 140 63.6
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 6.0e-39 164.5 143 62.2
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 7.8e-39 164.1 140 62.9
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 7.8e-39 164.1 145 64.8
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.0e-38 163.7 140 62.9
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.0e-38 163.7 145 64.8
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.7e-38 162.9 140 62.9
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 3.0e-38 162.2 144 62.5
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 3.9e-38 161.8 146 61.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 3.9e-38 161.8 132 68.2
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 6.6e-38 161.0 143 63.6
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 6.6e-38 161.0 126 68.3
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 6.6e-38 161.0 147 61.9
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 8.7e-38 160.6 140 62.1
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-37 160.2 144 62.5
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.1e-37 160.2 130 66.2
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.1e-37 160.2 144 59.7
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.5e-37 159.8 143 61.5
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 2.5e-37 159.1 129 68.2
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 7.3e-37 157.5 142 59.9
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 9.6e-37 157.1 153 58.8
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 9.6e-37 157.1 140 61.4
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.1e-36 156.0 144 61.8
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 2.1e-36 156.0 140 61.4
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 2.8e-36 155.6 132 65.2
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 2.8e-36 155.6 144 61.1
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.8e-36 155.6 143 58.7
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 3.6e-36 155.2 145 59.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 8.1e-36 154.1 157 57.3
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.4e-35 153.3 140 59.3
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.4e-35 153.3 141 56.7
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.8e-35 152.9 153 59.5
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.8e-35 152.9 140 60.0
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 3.1e-35 152.1 140 63.6
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 5.3e-35 151.4 120 67.5
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 6.9e-35 151.0 140 65.0
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 9.0e-35 150.6 140 65.0
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.0e-34 149.4 152 56.6
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 2.6e-34 149.1 143 57.3
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.7e-33 146.4 135 60.7
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.2e-33 146.0 144 57.6
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.1e-32 143.7 135 60.0
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.4e-32 143.3 124 63.7
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 2.4e-32 142.5 139 59.0
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 7.1e-32 141.0 125 61.6
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 9.3e-32 140.6 152 53.9
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.6e-31 139.8 141 56.0
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.7e-31 139.0 163 54.6
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-30 137.1 163 54.0
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-30 137.1 163 54.0
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.0e-30 137.1 140 57.1
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.3e-30 136.7 145 52.4
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 6.7e-30 134.4 143 58.7
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 6.7e-30 134.4 153 52.3
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.5e-29 133.3 141 56.7
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.9e-29 132.9 142 56.3
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 7.4e-29 131.0 138 55.1
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.3e-28 130.2 122 58.2
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.3e-28 130.2 156 51.9
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.6e-28 129.8 127 59.1
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 4.8e-28 128.3 122 59.8
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.8e-28 128.3 183 46.4
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 6.2e-28 127.9 137 54.7
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 6.2e-28 127.9 141 53.9
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 8.1e-28 127.5 140 53.6
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 8.1e-28 127.5 183 46.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 8.1e-28 127.5 139 53.2
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.4e-27 125.9 142 50.0
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.4e-27 125.9 127 49.6
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 3.1e-27 125.6 146 54.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 4.0e-27 125.2 138 51.4
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 5.3e-27 124.8 134 54.5
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 2.0e-26 122.9 151 49.0
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.6e-26 122.5 142 54.9
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.4e-26 122.1 133 55.6
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 3.4e-26 122.1 136 54.4
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 7.6e-26 120.9 127 57.5
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 7.6e-26 120.9 124 52.4
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 9.9e-26 120.6 133 51.1
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.3e-25 120.2 136 47.8
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.7e-25 119.8 140 48.6
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.7e-25 119.8 144 49.3
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.7e-25 119.8 123 55.3
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 6.4e-25 117.9 153 47.7
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 6.4e-25 117.9 158 50.6
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 8.4e-25 117.5 127 54.3
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.4e-24 116.7 139 48.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.9e-24 116.3 162 46.9
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.9e-24 116.3 132 53.0
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 2.4e-24 115.9 134 56.0
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.5e-24 114.8 133 51.9
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 7.1e-24 114.4 131 52.7
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 7.1e-24 114.4 122 50.8
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 7.1e-24 114.4 150 46.7
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.6e-23 113.2 155 45.2
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.6e-23 113.2 148 48.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.1e-23 112.8 133 51.9
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.1e-23 112.8 130 50.8
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.6e-23 111.7 140 54.3
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 6.0e-23 111.3 126 52.4
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 2.3e-22 109.4 118 53.4
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.1e-21 107.1 112 54.5
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.1e-21 107.1 135 48.1
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.3e-21 105.5 130 47.7
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 4.3e-21 105.1 122 46.7
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 3.7e-20 102.1 169 40.8
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.1e-19 100.5 139 46.0
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.5e-18 96.7 143 44.1
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.9e-17 92.4 176 38.6
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.9e-16 89.7 99 51.5
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 2.5e-16 89.4 158 39.9
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.1e-15 86.3 185 34.1
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 1.3e-14 83.6 91 50.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.9e-13 79.7 174 33.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 3.3e-13 79.0 148 38.5
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.7e-13 78.2 111 46.8
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 6.3e-12 74.7 76 51.3
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 6.9e-11 71.2 100 39.0
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 5.5e-08 61.6 102 43.1
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 2.7e-07 59.3 103 38.8


User provided reference genes

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