Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.3e-309 1064.7 518 100.0
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 3.3e-300 1034.2 516 97.1
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.0e-282 974.2 515 91.5
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 2.3e-269 931.8 512 86.9
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.1e-268 929.5 516 85.1
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.8e-267 924.9 514 85.4
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 2.9e-264 914.8 516 83.3
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 6.1e-262 907.1 516 83.3
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 2.3e-261 905.2 516 82.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 3.0e-261 904.8 516 82.6
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 3.9e-261 904.4 516 82.8
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.4e-260 900.2 521 82.5
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.3e-259 899.4 521 82.1
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.4e-258 896.0 516 82.2
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 3.4e-257 891.3 516 81.6
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.4e-257 891.3 514 82.5
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.2e-256 888.6 516 81.4
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.9e-256 888.3 516 82.4
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 5.0e-256 887.5 516 81.2
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 6.5e-256 887.1 515 82.3
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.9e-255 885.6 516 81.8
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.5e-255 885.2 517 81.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.5e-255 885.2 516 81.2
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.2e-255 884.8 522 80.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.2e-255 884.8 522 80.7
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 3.2e-255 884.8 516 80.4
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 3.2e-255 884.8 517 82.0
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 522 80.5
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 9.4e-255 883.2 546 78.0
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 1.2e-254 882.9 516 81.4
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.1e-254 882.1 522 80.5
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 7.9e-254 880.2 517 80.9
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 1.4e-253 879.4 516 80.8
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 3.0e-253 878.2 516 80.6
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 3.9e-253 877.9 517 81.4
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 3.9e-253 877.9 516 80.4
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 5.1e-253 877.5 517 80.9
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.1e-252 876.3 517 81.2
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.1e-252 876.3 517 81.2
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 2.0e-252 875.5 516 79.7
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 2.5e-252 875.2 516 79.5
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.3e-252 874.8 513 81.1
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 3.3e-252 874.8 513 81.1
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 7.4e-252 873.6 540 77.4
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 9.7e-252 873.2 515 80.6
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.3e-251 872.8 517 80.9
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.7e-251 872.5 517 80.3
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 4.8e-251 870.9 517 80.1
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.1e-250 869.8 519 78.8
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.5e-249 865.9 515 80.2
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-249 865.9 515 80.2
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.5e-249 865.9 516 79.1
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.6e-249 865.1 516 78.9
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.9e-249 864.0 523 79.3
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 7.7e-249 863.6 516 79.1
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.7e-248 862.4 516 79.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 2.9e-248 861.7 517 79.5
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.9e-248 861.7 517 79.3
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 5.0e-248 860.9 519 78.8
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 8.5e-248 860.1 514 79.0
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.1e-247 859.8 517 79.3
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-247 859.8 517 79.3
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-247 859.8 516 79.8
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 1.4e-247 859.4 516 79.3
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.4e-247 859.4 516 78.5
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.5e-247 858.6 517 78.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.5e-247 858.6 517 78.9
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.2e-247 857.8 517 78.9
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 4.2e-247 857.8 517 79.1
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 9.4e-247 856.7 516 78.3
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.1e-246 855.5 515 77.5
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.7e-246 855.1 550 76.2
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 3.6e-246 854.7 517 78.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-246 854.7 517 78.5
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 3.6e-246 854.7 517 78.5
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 6.7e-245 850.5 512 78.7
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 6.7e-245 850.5 519 79.0
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.5e-244 849.4 516 78.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 2.6e-244 848.6 516 78.1
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.3e-244 848.2 516 77.5
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 7.4e-244 847.0 522 76.8
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 1.1e-242 843.2 516 77.9
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 1.1e-242 843.2 516 79.1
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 1.6e-241 839.3 516 77.3
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.0e-241 839.0 514 77.8
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.0e-240 836.6 517 75.6
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.7e-240 835.9 517 77.2
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 2.9e-240 835.1 518 76.8
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 2.5e-239 832.0 518 77.0
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 4.2e-239 831.2 466 84.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 4.2e-239 831.2 516 77.3
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 7.2e-239 830.5 517 77.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 7.2e-239 830.5 521 77.2
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 7.2e-239 830.5 520 76.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-239 830.1 514 77.6
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 9.4e-239 830.1 516 77.1
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 516 77.1
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.6e-238 828.2 516 77.7
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 6.1e-238 827.4 515 75.7
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.0e-237 826.6 492 79.5
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 1.4e-237 826.2 511 77.1
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 1.7e-235 819.3 516 76.4
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 6.3e-235 817.4 514 77.0
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 8.2e-235 817.0 516 76.4
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.4e-234 815.5 466 83.9
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.1e-234 815.1 515 75.3
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 3.1e-234 815.1 517 75.0
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 5.3e-234 814.3 516 75.8
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 5.3e-234 814.3 526 74.5
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 9.1e-234 813.5 516 76.7
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 2.0e-233 812.4 468 81.6
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 1.5e-231 806.2 464 82.5
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.2e-231 804.7 466 81.1
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 9.4e-231 803.5 465 82.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.2e-230 803.1 549 72.9
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.6e-230 802.7 516 75.6
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.8e-229 799.3 515 73.4
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.8e-229 799.3 515 74.6
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.8e-227 792.0 557 70.7
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 4.8e-227 791.2 512 73.2
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 8.3e-227 790.4 484 78.3
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.8e-226 789.3 511 73.6
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.1e-226 788.5 512 73.0
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 4.1e-226 788.1 515 73.6
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.5e-225 784.6 569 68.5
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.9e-224 781.9 466 79.0
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.7e-222 775.4 516 71.9
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 8.0e-222 773.9 515 73.6
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.0e-221 771.9 516 71.5
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 5.2e-221 771.2 490 75.7
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 4.4e-220 768.1 546 70.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 2.8e-219 765.4 498 74.5
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.1e-218 761.5 498 74.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 6.8e-213 744.2 514 69.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 8.9e-213 743.8 516 71.1
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 2.0e-212 742.7 516 70.3
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.0e-209 732.6 516 69.6
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 4.0e-205 718.4 540 66.5
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.7e-203 713.0 516 69.0
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 7.8e-201 704.1 516 67.6
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.7e-200 703.0 502 71.7
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 1.9e-191 672.9 376 83.2
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 8.9e-189 664.1 375 83.5
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.2e-185 653.7 555 62.0
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.5e-185 652.1 480 67.7
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 9.9e-180 634.0 383 78.3
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.4e-178 630.2 480 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.1e-173 614.0 480 62.1
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 6.0e-169 598.2 446 63.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 1.4e-162 577.0 468 60.0
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 4.6e-153 545.4 486 56.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.1e-143 514.2 352 71.9
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 5.5e-130 468.8 293 77.1
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 1.2e-129 467.6 289 75.8
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.0e-128 463.0 291 75.9
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.8e-126 456.4 265 77.7
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.7e-123 447.2 288 76.0
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 6.5e-123 445.3 289 75.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 7.0e-109 398.7 246 75.6
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 3.5e-100 369.8 244 74.2
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-81 308.1 200 72.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 9.6e-58 228.8 132 77.3
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 3.8e-54 216.9 473 31.9
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 2.3e-51 207.6 472 31.8
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.8e-41 173.3 203 48.8
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.2e-38 164.5 141 56.0
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.8e-33 147.5 109 65.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.0e-27 127.5 86 72.1
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 2.5e-21 107.8 59 81.4
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.6e-20 105.1 142 47.2
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.0e-19 102.4 60 75.0
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 7.4e-18 96.3 156 37.2
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.5e-13 81.3 167 34.7
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 2.0e-07 61.6 47 59.6
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.5e-07 60.8 115 39.1
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 1.7e-06 58.5 51 58.8


User provided reference genes

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