Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 0.0e+00 1219.9 682 100.0
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 0.0e+00 1114.0 687 92.1
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 6.3e-251 870.9 695 72.5
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.7e-240 836.3 709 70.4
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 9.5e-239 830.5 709 69.8
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.8e-237 826.2 711 69.8
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.0e-237 825.1 714 69.5
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.8e-237 824.3 716 68.4
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 8.3e-235 817.4 700 69.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.4e-234 814.7 718 68.1
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.7e-233 812.4 712 67.4
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.3e-232 809.3 705 68.2
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 6.6e-232 807.7 727 66.7
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 8.6e-232 807.4 755 64.9
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.1e-231 807.0 710 67.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 8.0e-230 800.8 713 67.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-228 797.0 716 66.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 3.4e-228 795.4 710 67.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.4e-228 795.4 716 67.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.7e-227 793.1 713 66.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-226 790.0 710 66.9
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-226 789.6 708 66.9
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.1e-225 786.2 700 67.4
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.3e-224 783.5 710 67.0
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.3e-224 783.5 709 66.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-223 780.4 712 65.2
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.3e-223 778.9 704 66.6
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-220 770.0 725 64.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 5.8e-220 768.1 604 75.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 6.4e-219 764.6 707 65.8
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 6.0e-217 758.1 707 65.2
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.3e-215 751.1 560 77.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 9.5e-215 750.7 713 64.2
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.4e-212 742.3 711 64.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 3.2e-210 735.7 714 64.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 7.1e-210 734.6 714 64.0
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.5e-209 732.3 738 61.5
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.8e-205 719.9 656 67.8
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.0e-204 716.5 739 61.3
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 3.4e-204 715.7 676 64.3
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.4e-204 715.7 711 62.0
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 5.8e-204 714.9 707 62.7
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.3e-203 713.8 718 61.8
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.2e-203 713.0 768 59.0
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 3.8e-203 712.2 726 60.7
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 6.4e-203 711.4 709 62.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 9.3e-202 707.6 712 60.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 2.7e-201 706.1 723 60.2
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.9e-199 699.9 709 60.6
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.6e-198 695.7 724 61.2
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 9.0e-197 691.0 721 60.7
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 7.6e-196 688.0 720 60.7
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.9e-195 686.0 703 61.5
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.9e-194 683.3 720 59.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-194 682.9 725 59.9
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-194 682.9 725 60.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.0e-193 678.3 725 59.6
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.3e-192 676.4 724 59.4
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 3.0e-192 676.0 715 58.5
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.9e-192 675.6 710 60.4
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 5.1e-192 675.2 721 59.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.9e-191 673.3 721 59.1
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.9e-191 673.3 718 59.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.3e-190 670.6 685 60.9
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.6e-190 670.2 721 58.9
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-189 665.6 735 58.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.9e-189 664.8 737 57.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 4.5e-188 662.1 703 59.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 7.6e-188 661.4 726 58.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 9.9e-188 661.0 715 58.9
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.8e-187 659.1 698 60.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 6.4e-187 658.3 705 58.9
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 9.3e-186 654.4 709 59.0
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 6.0e-185 651.7 701 59.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.3e-184 650.6 715 57.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 5.1e-184 648.7 709 58.1
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 3.7e-182 642.5 631 62.6
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.5e-180 637.1 734 56.0
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.9e-179 632.9 704 57.7
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.1e-178 628.2 678 58.7
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 3.5e-177 625.9 710 57.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.9e-177 624.8 735 56.3
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-175 620.5 736 55.3
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 9.7e-175 617.8 712 56.5
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.3e-174 617.5 715 56.2
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.2e-174 616.7 721 55.8
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.8e-174 616.3 759 55.3
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.4e-173 613.2 477 72.1
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.6e-172 609.8 720 55.0
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.5e-172 609.0 793 52.1
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.1e-170 604.4 705 55.9
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 4.2e-170 602.4 719 56.7
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.6e-169 600.5 722 55.1
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.4e-168 597.4 716 55.0
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 5.1e-168 595.5 703 55.0
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 5.1e-168 595.5 688 54.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.5e-167 593.2 708 55.4
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.3e-163 580.9 742 53.1
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.1e-159 567.8 757 51.5
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 2.0e-159 567.0 725 53.1
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.3e-157 558.9 673 53.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 3.8e-155 552.7 379 80.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.5e-154 550.1 698 52.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.0e-152 544.7 725 50.2
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.8e-152 543.9 698 52.3
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 9.1e-149 531.6 612 57.4
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 8.9e-128 461.8 448 63.8
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.6e-127 460.3 658 50.0
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 9.2e-125 451.8 527 55.8
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.5e-111 405.6 492 56.1
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.4e-110 402.5 492 55.9
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.5e-103 381.3 227 90.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 3.4e-103 380.2 723 40.8
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.8e-89 333.2 430 50.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 5.3e-88 329.7 245 78.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.4e-85 321.6 431 52.0
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.9e-83 313.5 210 81.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.9e-83 313.5 210 81.4
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.4e-80 304.3 231 76.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.4e-80 304.3 231 75.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.1e-77 295.4 183 85.2
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.3e-74 283.5 549 40.8
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.8e-72 278.1 440 45.7
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.6e-71 274.2 172 89.5
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 5.7e-66 256.5 380 47.6
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.4e-63 247.3 417 42.2
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 2.4e-56 224.6 136 87.5
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 6.9e-56 223.0 406 43.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.2e-44 185.7 550 32.9
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-40 172.6 276 47.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.9e-37 161.8 206 54.9
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 3.5e-31 141.0 94 77.7
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 5.5e-29 133.7 241 41.5
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 9.4e-29 132.9 86 88.4
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 4.0e-27 127.5 212 46.7
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 4.4e-26 124.0 231 43.3
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.9e-23 113.6 296 36.5
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-22 110.5 68 89.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-21 106.7 70 87.1
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-21 106.7 70 87.1
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.2e-21 106.7 70 87.1
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 6.1e-20 103.6 72 81.9
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 6.3e-17 93.6 451 27.5
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.6e-12 79.0 65 70.8
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 8.9e-11 73.2 284 29.2
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.2e-10 72.8 95 52.6
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.1e-08 66.2 79 48.1
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.4e-08 63.9 50 74.0
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 3.5e-07 61.2 365 24.1
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.7e-06 58.9 118 44.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 3.0e-06 58.2 64 60.9
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 3.0e-06 58.2 324 25.9
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 3.9e-06 57.8 486 24.9
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 8.6e-06 56.6 347 26.2
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 8.6e-06 56.6 349 26.6


User provided reference genes

Program Settings