Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.3e-82 309.7 152 100.0
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 2.1e-77 292.4 150 95.3
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 2.9e-71 271.9 152 86.8
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.6e-69 266.2 149 86.6
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 1.8e-68 262.7 149 83.9
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.8e-68 262.7 149 83.2
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 3.0e-68 261.9 149 82.6
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 3.0e-68 261.9 151 85.4
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 5.1e-68 261.2 149 81.9
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 3.3e-67 258.5 149 81.2
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 3.3e-67 258.5 151 83.4
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 4.3e-67 258.1 151 80.8
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 9.6e-67 256.9 149 81.2
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 1.3e-66 256.5 149 83.9
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 3.7e-66 255.0 148 81.8
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 4.8e-66 254.6 149 81.2
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.8e-66 254.6 149 83.2
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.8e-66 254.6 149 83.2
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 1.1e-65 253.4 149 82.6
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 1.1e-65 253.4 149 81.9
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.8e-65 252.7 149 77.9
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.8e-65 252.7 144 84.0
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 1.8e-65 252.7 148 81.1
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.8e-65 252.7 148 81.8
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.8e-65 252.7 149 77.9
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 1.8e-65 252.7 149 77.2
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 6.9e-65 250.8 149 79.2
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 9.0e-65 250.4 149 79.9
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.2e-64 250.0 146 79.5
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 1.2e-64 250.0 149 80.5
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.5e-64 249.6 149 76.5
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 2.0e-64 249.2 149 80.5
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 2.0e-64 249.2 149 79.9
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 3.4e-64 248.4 149 78.5
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 5.9e-64 247.7 147 76.9
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 7.6e-64 247.3 151 78.8
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 7.6e-64 247.3 149 75.8
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.6e-64 247.3 149 79.2
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.0e-63 246.9 142 82.4
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 1.0e-63 246.9 147 75.5
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 1.3e-63 246.5 149 78.5
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 1.3e-63 246.5 149 78.5
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 1.7e-63 246.1 144 80.6
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 1.7e-63 246.1 149 77.9
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.2e-63 245.7 149 77.9
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 2.9e-63 245.4 147 76.2
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 2.9e-63 245.4 149 75.8
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 2.9e-63 245.4 146 76.0
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 5.0e-63 244.6 147 74.8
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 5.0e-63 244.6 147 77.6
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 8.5e-63 243.8 143 82.5
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 8.5e-63 243.8 149 78.5
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.1e-62 243.4 149 77.9
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.1e-62 243.4 144 79.9
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.9e-62 242.7 147 78.9
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 5.5e-62 241.1 146 77.4
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.5e-62 241.1 149 77.2
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 5.5e-62 241.1 147 78.2
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 9.3e-62 240.4 149 75.8
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 9.3e-62 240.4 144 78.5
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 9.3e-62 240.4 147 73.5
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.6e-61 239.6 149 76.5
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.6e-61 239.6 149 73.8
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 2.1e-61 239.2 146 76.7
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.7e-61 238.8 149 73.2
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 3.6e-61 238.4 149 72.5
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 4.6e-61 238.0 149 73.8
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 6.1e-61 237.7 147 73.5
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 6.1e-61 237.7 149 75.8
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 6.1e-61 237.7 140 80.0
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 7.9e-61 237.3 145 75.9
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 1.0e-60 236.9 147 74.1
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.3e-60 236.5 147 74.8
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.3e-60 236.5 149 73.2
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.3e-60 235.7 147 76.2
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 2.3e-60 235.7 143 76.9
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 3.0e-60 235.3 147 75.5
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 3.0e-60 235.3 147 72.8
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 1.5e-59 233.0 143 78.3
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 1.9e-59 232.6 149 71.8
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 9.7e-59 230.3 145 73.8
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 2.8e-58 228.8 151 69.5
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.4e-57 226.5 135 79.3
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.1e-57 225.3 146 72.6
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 3.1e-57 225.3 148 73.0
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 3.1e-57 225.3 145 71.7
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 2.0e-56 222.6 146 72.6
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.0e-56 222.6 144 73.6
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 2.0e-56 222.6 144 75.0
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 5.9e-56 221.1 142 73.9
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 1.7e-55 219.5 144 72.2
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 5.0e-55 218.0 142 72.5
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 1.4e-54 216.5 144 70.8
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.9e-54 216.1 144 70.8
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 7.2e-54 214.2 144 70.1
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 7.2e-54 214.2 144 69.4
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 9.4e-54 213.8 146 71.2
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 1.2e-53 213.4 144 68.8
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.2e-53 213.4 150 65.3
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 1.6e-53 213.0 144 68.8
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 2.1e-53 212.6 144 68.8
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.7e-53 212.2 144 70.1
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 7.9e-53 210.7 147 66.7
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 1.0e-52 210.3 144 68.8
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 1.4e-52 209.9 144 68.8
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 1.4e-52 209.9 144 68.8
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 3.9e-52 208.4 144 66.7
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 2.2e-50 202.6 118 83.9
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 4.1e-49 198.4 149 59.1
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 2.0e-48 196.1 149 60.4
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 4.5e-48 194.9 142 62.0
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.2e-47 192.6 113 78.8
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 3.8e-47 191.8 144 66.7
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 4.2e-46 188.3 148 57.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.5e-43 179.9 118 72.9
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 4.8e-42 174.9 131 60.3
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.8e-41 172.9 145 53.1
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 3.5e-40 168.7 99 77.8
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 5.0e-39 164.9 102 79.4
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 2.7e-37 159.1 149 51.7
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 4.7e-37 158.3 132 65.2
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 8.0e-37 157.5 144 47.9
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 8.0e-37 157.5 144 51.4
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.5e-35 153.3 144 50.7
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 9.1e-33 144.1 101 66.3
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 9.1e-33 144.1 143 53.1
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 7.2e-30 134.4 144 50.7
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 2.1e-29 132.9 98 59.2
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 6.8e-28 127.9 141 46.1
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 3.7e-26 122.1 147 46.3
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-24 117.1 90 62.2
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 2.0e-24 116.3 142 42.3
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 7.2e-22 107.8 85 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 8.0e-21 104.4 84 54.8


User provided reference genes

Program Settings