Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.8e-113 412.1 320 100.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 3.1e-99 365.9 311 95.8
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.0e-89 332.0 313 85.9
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 8.2e-84 314.7 308 85.1
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 5.9e-82 308.5 318 80.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 4.2e-80 302.4 319 82.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.6e-79 299.3 309 82.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 3.6e-79 299.3 310 73.5
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.9e-78 295.8 309 81.2
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 6.7e-78 295.0 316 71.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.5e-77 293.9 308 81.8
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.5e-77 293.9 306 78.8
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.6e-77 293.1 309 81.2
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 5.7e-77 292.0 318 80.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 7.4e-77 291.6 320 74.1
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 6.3e-76 288.5 309 72.5
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.3e-75 285.4 318 75.2
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 9.1e-75 284.6 321 74.5
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.6e-74 283.1 313 78.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.6e-74 283.1 318 76.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 3.5e-74 282.7 305 79.0
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 4.5e-74 282.3 313 81.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 5.9e-74 282.0 311 72.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.7e-74 281.6 291 82.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.7e-74 281.6 291 82.5
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.3e-73 280.8 305 79.0
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.3e-73 280.8 299 80.9
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.3e-73 280.8 287 85.4
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.7e-73 280.4 291 82.5
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.8e-73 279.3 301 80.4
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.8e-73 279.3 301 73.1
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 5.0e-73 278.9 293 65.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-72 277.7 308 69.8
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.1e-72 277.7 305 77.7
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.5e-72 277.3 305 72.1
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.5e-72 277.3 305 71.8
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.5e-72 277.3 308 78.6
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-72 276.9 305 71.5
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-72 276.2 303 72.3
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 3.2e-72 276.2 294 66.3
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 4.2e-72 275.8 296 79.4
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 4.2e-72 275.8 307 73.6
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 5.5e-72 275.4 305 71.8
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-72 275.4 305 71.8
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 7.2e-72 275.0 296 72.6
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 7.2e-72 275.0 303 72.3
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.2e-71 274.2 292 69.9
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-71 273.5 296 79.1
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.1e-71 273.5 296 79.1
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.1e-71 273.5 305 71.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.1e-71 273.5 314 66.9
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.7e-71 273.1 304 78.0
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.6e-71 272.7 305 71.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.6e-71 272.7 296 74.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 4.7e-71 272.3 244 75.8
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 6.1e-71 271.9 293 73.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-70 270.4 304 69.7
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 2.3e-70 270.0 298 79.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.0e-70 269.6 305 71.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.0e-70 269.2 297 81.1
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.5e-69 267.3 334 58.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.5e-69 267.3 308 71.4
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.6e-69 266.5 314 76.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.6e-69 266.5 291 70.4
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.6e-69 266.5 308 78.2
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 3.3e-69 266.2 313 75.7
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 5.7e-69 265.4 287 75.3
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 9.7e-69 264.6 296 70.6
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 9.7e-69 264.6 308 71.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.3e-68 264.2 303 75.6
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.7e-68 263.8 318 72.0
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.7e-68 263.8 305 71.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 6.3e-68 261.9 303 78.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 8.2e-68 261.5 291 79.0
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 8.2e-68 261.5 309 77.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.4e-67 260.8 305 69.8
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.4e-67 260.8 297 71.0
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.4e-67 260.8 300 74.0
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.4e-67 260.0 310 76.8
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 2.4e-67 260.0 311 68.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 3.1e-67 259.6 307 73.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 4.1e-67 259.2 310 66.5
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.1e-67 258.1 312 75.6
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 9.1e-67 258.1 293 72.4
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 9.1e-67 258.1 303 73.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.2e-66 257.7 301 67.4
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.2e-66 257.7 316 73.1
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.6e-66 257.3 291 80.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.5e-66 256.1 317 65.3
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 3.5e-66 256.1 317 65.3
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.0e-65 254.6 293 64.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.0e-65 254.6 293 64.8
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.3e-65 254.2 293 72.4
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-65 253.8 235 70.6
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.7e-65 253.8 170 80.6
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.2e-65 253.4 293 64.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 2.9e-65 253.1 297 69.7
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 3.8e-65 252.7 297 71.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 3.8e-65 252.7 278 74.8
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.2e-64 249.6 311 58.2
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 5.5e-64 248.8 313 71.9
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.6e-63 247.3 291 78.4
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.6e-63 247.3 296 71.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.3e-62 243.4 307 67.8
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 8.8e-62 241.5 287 74.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 4.4e-61 239.2 285 76.5
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 8.3e-60 235.0 311 73.3
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-58 230.7 231 67.1
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 2.7e-58 229.9 302 59.9
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 7.7e-58 228.4 216 63.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-56 224.2 231 76.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.5e-56 224.2 297 58.6
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.5e-53 214.2 347 51.6
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-53 213.4 191 70.2
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-53 211.8 189 72.0
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-52 208.8 291 61.5
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-51 207.6 189 61.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-51 207.2 189 61.4
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-50 204.5 287 66.2
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-49 199.9 189 67.7
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 7.3e-48 195.3 299 56.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-47 193.7 183 79.8
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-45 186.8 150 70.0
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 7.5e-45 185.3 302 61.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 9.8e-45 184.9 284 71.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.7e-44 183.0 270 64.1
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 7.8e-42 175.3 287 62.7
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 5.0e-41 172.6 184 67.4
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-40 170.6 184 60.3
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.3e-40 169.9 221 82.4
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.6e-40 169.1 165 58.2
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 9.5e-40 168.3 287 61.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-39 167.9 148 62.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.6e-39 167.5 146 63.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.8e-39 166.8 185 57.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-38 163.3 130 67.7
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 6.8e-38 162.2 306 56.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.5e-37 161.0 121 71.1
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-34 150.2 223 51.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.5e-34 149.8 150 59.3
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 7.8e-34 148.7 168 56.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-33 147.9 155 60.6
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.0e-33 146.7 207 77.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-32 143.7 151 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 4.3e-32 142.9 303 48.5
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 2.3e-30 137.1 305 56.4
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 4.4e-29 132.9 156 61.5
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 6.4e-28 129.0 150 68.7
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 3.5e-26 123.2 115 57.4
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-22 111.3 93 67.7
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-22 111.3 93 67.7
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-22 110.2 98 65.3
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 4.1e-19 99.8 147 42.9
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.1e-19 99.0 91 63.7
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-16 88.6 92 57.6
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.4e-14 84.0 67 70.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.2e-14 82.8 92 55.4
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.5e-13 81.3 155 73.5
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.7e-12 77.8 163 35.0
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.6e-10 71.2 61 62.3
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 3.5e-10 70.1 46 73.9
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.3e-08 62.4 62 59.7
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.1e-06 58.5 158 53.2
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 9.0e-06 55.5 85 41.2


User provided reference genes

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