Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 5.2e-166 587.8 333 100.0
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 7.3e-144 514.2 333 85.6
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.4e-102 376.3 282 62.8
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 3.1e-102 375.9 281 63.7
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 4.1e-102 375.6 272 66.2
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 4.5e-101 372.1 282 62.4
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.8e-100 369.0 270 66.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 3.2e-99 365.9 275 65.5
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 7.2e-99 364.8 269 65.1
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.2e-98 364.0 267 65.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.2e-98 364.0 267 64.0
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 2.7e-98 362.8 269 63.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 3.6e-98 362.5 269 65.1
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 3.6e-98 362.5 275 64.7
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.4e-97 360.5 280 61.1
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.3e-97 359.8 271 63.1
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.0e-97 359.4 280 61.1
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 5.2e-97 358.6 277 62.5
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 5.2e-97 358.6 275 61.8
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.0e-96 356.7 279 63.1
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 9.7e-96 354.4 263 64.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 9.7e-96 354.4 280 62.5
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.7e-95 353.6 266 64.7
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.7e-95 353.6 280 60.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 8.2e-95 351.3 263 63.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.4e-94 350.5 263 63.5
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.8e-94 350.1 261 65.9
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.8e-94 350.1 261 65.9
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 4.1e-94 349.0 265 62.6
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.1e-94 349.0 265 63.0
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.0e-93 346.7 259 64.5
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.0e-93 346.7 259 64.5
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 3.5e-93 345.9 259 65.3
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.5e-93 345.5 261 64.4
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.9e-93 345.1 261 64.0
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.0e-92 344.4 281 59.1
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.3e-92 344.0 242 65.3
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.2e-92 343.2 259 64.1
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.9e-92 342.8 260 61.5
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 3.8e-92 342.4 289 59.5
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 3.8e-92 342.4 279 57.3
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.8e-92 342.4 283 59.0
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.5e-91 340.5 290 57.2
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.2e-90 337.4 259 64.5
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 3.6e-90 335.9 289 57.8
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 3.6e-90 335.9 259 62.5
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 4.7e-90 335.5 279 60.6
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 6.1e-90 335.1 265 60.4
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 5.2e-89 332.0 267 62.9
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.2e-89 332.0 271 60.9
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-88 330.9 258 63.2
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 3.4e-88 329.3 259 61.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 3.4e-88 329.3 259 61.8
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 5.7e-88 328.6 284 58.8
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.7e-87 327.0 280 57.1
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.6e-85 320.5 279 57.0
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.0e-85 320.1 279 57.0
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.0e-84 317.8 292 52.7
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.0e-84 317.8 265 58.9
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.2e-84 316.6 269 56.5
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 5.0e-84 315.5 212 72.6
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 8.5e-84 314.7 290 54.1
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 8.5e-84 314.7 254 59.4
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.9e-83 313.5 259 58.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.2e-82 310.8 271 55.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.1e-82 310.1 280 55.4
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 3.6e-82 309.3 285 54.0
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.4e-81 307.4 272 56.2
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-81 307.0 271 55.4
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 5.2e-81 305.4 214 68.2
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 6.8e-81 305.1 264 57.2
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 8.8e-81 304.7 267 57.3
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-80 304.3 267 55.4
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.0e-80 303.5 259 57.9
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.6e-80 303.1 269 56.1
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 4.4e-80 302.4 267 55.4
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 4.4e-80 302.4 282 53.9
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 5.7e-80 302.0 271 55.7
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 7.5e-80 301.6 288 50.3
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 3.7e-79 299.3 284 52.5
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 7.0e-78 295.0 273 53.1
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.6e-77 293.9 254 59.8
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.7e-77 291.6 268 52.6
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 7.7e-77 291.6 268 53.4
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 2.9e-76 289.7 267 52.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 6.6e-76 288.5 276 49.3
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 8.6e-76 288.1 285 53.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.1e-75 287.7 280 51.8
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.5e-75 287.3 271 55.7
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 5.5e-75 285.4 283 52.7
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 2.1e-74 283.5 241 57.3
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.8e-74 283.1 285 51.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 3.6e-74 282.7 271 52.8
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 4.7e-74 282.3 257 54.5
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.7e-74 282.3 246 54.9
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 6.1e-74 282.0 250 57.6
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 9.8e-72 274.6 247 57.1
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.7e-71 272.7 275 50.9
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 5.6e-67 258.8 247 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 3.6e-66 256.1 280 48.6
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.8e-65 253.8 298 46.3
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 2.2e-63 246.9 191 61.3
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 4.9e-63 245.7 276 48.2
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.6e-61 240.7 352 39.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.0e-61 240.4 296 43.9
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 2.7e-61 240.0 255 49.0
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.0e-60 238.0 271 44.6
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.0e-60 236.5 270 48.1
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 6.6e-60 235.3 277 44.0
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.3e-55 221.1 197 58.9
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.7e-55 220.7 214 51.9
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.7e-55 220.7 214 51.9
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.1e-54 215.3 215 51.6
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.1e-54 215.3 215 51.6
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.0e-52 211.5 221 50.7
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.1e-51 208.0 290 39.7
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 7.3e-51 205.3 206 51.0
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.6e-48 195.3 276 40.6
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.1e-46 191.4 187 49.7
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.4e-46 190.3 243 41.6
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.9e-43 180.6 123 69.1
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 4.7e-42 176.0 165 56.4
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 7.6e-40 168.7 146 57.5
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.9e-38 164.1 438 28.8
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.7e-36 157.5 129 61.2
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 9.6e-35 151.8 296 32.8
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 4.8e-34 149.4 351 30.5
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.4e-33 147.1 162 48.1
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.9e-31 140.2 335 29.9
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 9.3e-30 135.2 118 57.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 1.5e-27 127.9 76 75.0
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 1.9e-27 127.5 380 27.1
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 6.4e-23 112.5 166 41.6
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 2.1e-21 107.5 151 40.4
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 7.4e-19 99.0 151 37.1
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.6e-18 97.8 165 36.4
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.4e-17 94.0 52 75.0
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.4e-17 94.0 194 33.0
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.5e-16 91.3 71 59.2
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.4e-16 90.1 57 64.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.1e-12 76.3 80 45.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.7e-11 72.8 46 60.9
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 7.6e-08 62.4 37 73.0
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 2.2e-07 60.8 65 41.5
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.8e-07 60.1 29 82.8
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 5.0e-07 59.7 87 39.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 6.5e-07 59.3 35 65.7


User provided reference genes

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