Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.7e-103 379.4 199 100.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 8.7e-84 313.9 225 82.2
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.8e-73 279.6 200 76.5
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 2.3e-68 262.7 200 76.0
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.1e-65 252.3 199 71.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.7e-63 246.5 201 67.7
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.2e-61 240.4 205 71.2
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.9e-61 237.7 201 70.6
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.3e-59 232.3 203 69.0
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 4.4e-59 231.9 204 71.6
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.5e-56 223.4 208 66.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 5.9e-56 221.5 204 69.1
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.2e-53 213.8 201 62.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.3e-52 209.5 202 66.3
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 4.8e-50 201.8 205 63.9
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.2e-50 201.1 224 58.9
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.1e-49 198.7 200 60.0
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.3e-47 193.7 203 61.6
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.3e-47 193.7 212 58.5
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.9e-46 189.9 205 60.5
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.9e-46 189.9 205 60.5
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.5e-46 189.5 205 60.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 3.2e-46 189.1 201 59.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 4.2e-46 188.7 215 59.5
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.1e-45 186.4 200 60.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.1e-45 186.4 202 60.9
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.6e-45 185.7 200 60.5
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.7e-45 185.3 203 60.6
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.1e-45 184.9 202 61.4
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 8.0e-45 184.5 204 56.4
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.4e-44 183.7 212 56.1
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-44 183.7 209 58.9
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 8.8e-44 181.0 204 61.8
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.3e-43 179.1 204 63.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.7e-42 176.8 203 56.7
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.8e-42 176.0 163 68.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.7e-42 175.6 212 57.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 8.2e-42 174.5 209 52.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-41 174.1 212 57.1
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.4e-41 172.9 203 54.2
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 7.0e-41 171.4 200 54.5
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.2e-40 170.6 207 58.5
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.6e-40 170.2 206 55.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.6e-40 170.2 205 54.6
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 4.5e-40 168.7 206 56.3
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.9e-40 168.3 203 56.2
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.9e-40 168.3 220 54.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-39 166.4 193 63.7
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.2e-39 166.4 208 56.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.2e-39 166.4 213 54.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.9e-39 166.0 204 62.3
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.8e-39 165.6 210 53.3
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.1e-38 164.1 207 58.0
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.5e-38 163.7 203 58.1
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.9e-38 163.3 200 56.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.5e-38 162.9 210 48.1
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 2.5e-38 162.9 210 52.4
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.7e-37 158.7 217 52.1
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 8.0e-37 157.9 203 51.2
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-36 157.5 214 57.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.4e-36 157.1 207 55.1
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 4.4e-35 152.1 208 54.3
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.3e-34 150.6 210 52.9
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.2e-34 149.8 216 47.7
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.8e-33 146.7 202 46.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.4e-33 146.4 210 51.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.4e-33 145.2 210 46.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.0e-33 144.8 214 45.8
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 9.1e-33 144.4 214 46.3
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 9.1e-33 144.4 205 53.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-32 142.9 210 47.1
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.5e-32 142.5 211 50.7
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.5e-32 142.5 208 50.5
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.3e-31 140.6 212 49.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-31 140.6 216 49.5
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-31 140.2 210 46.7
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.7e-31 140.2 212 46.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.2e-31 139.8 203 46.8
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.2e-31 139.8 215 50.7
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.2e-31 139.8 217 49.3
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.9e-31 139.4 215 50.7
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.0e-31 138.7 210 46.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.0e-31 138.7 210 46.2
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.0e-31 138.7 203 49.8
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.5e-31 137.9 211 46.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 2.5e-30 136.3 210 44.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 3.2e-30 136.0 210 44.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.2e-30 136.0 210 45.7
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.2e-30 136.0 210 45.7
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.2e-30 136.0 226 47.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 5.5e-30 135.2 203 49.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 7.2e-30 134.8 210 43.8
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 7.2e-30 134.8 207 43.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 7.2e-30 134.8 179 53.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.6e-29 133.7 213 43.7
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-29 133.3 187 46.5
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.1e-29 133.3 210 46.2
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 2.8e-29 132.9 198 46.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.8e-29 132.9 215 46.5
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 3.6e-29 132.5 134 59.7
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.4e-28 130.6 143 63.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.8e-28 130.2 150 52.7
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-28 129.8 209 43.1
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-28 129.8 209 43.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.3e-28 129.8 209 43.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.3e-28 129.8 220 45.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.0e-28 129.4 199 49.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 8.8e-28 127.9 203 47.8
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.5e-27 127.1 215 46.0
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-27 127.1 209 42.6
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.5e-27 127.1 225 46.2
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.4e-27 125.9 143 51.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 4.4e-27 125.6 210 43.8
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.7e-26 123.6 192 44.3
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-26 122.9 186 44.6
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 3.7e-26 122.5 216 43.5
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 6.3e-26 121.7 214 49.1
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.3e-26 121.7 152 55.3
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 9.2e-25 117.9 216 42.6
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-24 117.1 167 47.9
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.0e-24 116.7 208 40.9
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.5e-24 115.9 210 44.3
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 3.5e-24 115.9 109 61.5
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 5.9e-24 115.2 166 43.4
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 5.9e-24 115.2 174 51.7
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.3e-23 114.0 197 42.6
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.0e-23 112.1 198 47.0
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 8.6e-23 111.3 209 39.7
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.9e-22 110.2 181 42.5
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.3e-22 109.4 159 45.9
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 3.3e-22 109.4 205 41.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 9.5e-22 107.8 170 47.1
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 9.5e-22 107.8 170 47.1
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-21 106.7 211 40.8
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.1e-21 106.7 178 41.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-21 106.3 210 39.5
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.8e-21 106.3 153 50.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.7e-21 105.5 192 40.6
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-20 104.4 214 42.1
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.0e-20 104.4 214 42.5
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.4e-20 104.0 166 45.2
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.2e-19 100.9 168 48.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.7e-19 98.6 151 47.0
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 5.7e-19 98.6 197 40.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 7.5e-19 98.2 171 46.8
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 9.8e-19 97.8 206 41.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.7e-18 97.1 206 38.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.7e-18 97.1 212 38.2
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.7e-18 97.1 92 65.2
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-17 94.4 210 39.0
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.1e-17 92.4 209 35.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 7.0e-17 91.7 177 42.4
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.8e-16 88.2 208 40.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-15 87.8 124 47.6
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-15 87.4 215 40.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-15 85.9 210 36.7
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.5e-14 84.0 128 49.2
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.9e-14 83.6 123 44.7
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.5e-14 83.2 216 40.7
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 4.3e-14 82.4 99 52.5
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-13 80.9 202 39.1
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-13 80.1 164 34.8
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 6.8e-12 75.1 211 34.6
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.5e-11 73.9 207 36.2
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.5e-11 73.9 150 40.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 2.0e-11 73.6 132 43.2
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 4.4e-11 72.4 210 38.1
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 9.8e-11 71.2 209 34.9
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 2.2e-10 70.1 208 34.1
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 8.3e-10 68.2 115 48.7
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-09 67.4 47 68.1
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.2e-09 66.2 86 52.3
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 2.7e-08 63.2 172 39.0
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.3e-07 60.8 63 54.0
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.3e-07 60.8 184 33.2
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 3.9e-07 59.3 66 51.5
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.9e-06 57.0 164 32.3
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.3e-06 56.2 195 35.4
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 7.3e-06 55.1 200 32.5


User provided reference genes

Program Settings