Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 9.9e-118 426.8 214 100.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 4.0e-111 404.8 211 95.3
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 5.5e-100 367.9 209 84.2
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 5.5e-100 367.9 210 84.3
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 5.5e-100 367.9 213 82.6
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.5e-97 359.8 210 81.9
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 2.5e-97 359.0 212 81.6
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.3e-97 358.2 208 81.7
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.6e-96 356.3 209 80.9
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.8e-96 354.8 206 82.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 4.8e-96 354.8 214 79.4
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 4.8e-96 354.8 210 80.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 6.3e-96 354.4 213 82.2
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.8e-95 352.8 210 79.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.4e-95 352.4 206 80.6
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.1e-95 352.1 214 79.0
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.1e-95 352.1 212 78.3
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.9e-95 350.9 214 78.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 9.0e-95 350.5 208 79.8
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 3.4e-94 348.6 207 80.7
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.2e-93 345.9 212 75.9
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.9e-93 345.5 206 78.2
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 2.9e-93 345.5 209 78.9
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.9e-93 345.5 214 76.6
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.8e-93 345.1 210 79.0
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.0e-93 344.7 209 78.0
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 6.5e-93 344.4 211 78.7
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-92 343.6 210 78.6
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.9e-92 342.8 212 75.5
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.9e-92 342.8 210 78.6
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 3.2e-92 342.0 209 78.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 9.3e-92 340.5 211 77.7
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.2e-91 340.1 209 78.0
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.1e-91 339.3 205 80.0
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 3.5e-91 338.6 209 77.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 6.1e-91 337.8 209 77.5
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 7.9e-91 337.4 209 77.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 7.9e-91 337.4 209 77.5
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.0e-90 337.0 208 76.4
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 1.3e-90 336.7 206 77.2
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.8e-90 336.3 209 77.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.8e-90 336.3 205 78.5
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.3e-90 335.9 209 76.6
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.3e-90 335.9 209 76.1
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.0e-90 335.5 205 77.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.0e-90 335.5 209 77.0
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 3.0e-90 335.5 209 77.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.9e-90 335.1 214 73.8
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 6.7e-90 334.3 205 78.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 6.7e-90 334.3 209 76.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 8.7e-90 334.0 211 75.8
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.7e-90 334.0 232 70.7
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 75.6
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.9e-89 332.8 208 76.0
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.9e-89 332.8 209 75.1
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.9e-89 332.8 207 76.3
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 75.5
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 74.5
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 2.5e-89 332.4 208 75.5
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 75.5
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 74.5
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 74.5
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.3e-89 332.0 209 75.1
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 4.3e-89 331.6 213 74.6
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 5.7e-89 331.3 208 75.0
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 5.7e-89 331.3 208 74.0
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 5.7e-89 331.3 210 75.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 7.4e-89 330.9 208 75.5
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 9.7e-89 330.5 208 74.5
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.2e-88 329.3 206 75.7
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 2.8e-88 328.9 209 74.6
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.8e-88 328.9 208 74.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.8e-88 328.9 209 74.6
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 3.7e-88 328.6 209 74.6
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.7e-88 328.6 208 73.6
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.8e-87 326.2 206 74.8
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.8e-87 326.2 203 76.4
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.1e-87 325.1 215 72.6
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.5e-86 323.2 211 74.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 5.9e-86 321.2 209 74.2
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 7.7e-86 320.9 211 73.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.9e-85 318.9 209 74.2
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.9e-85 318.9 212 75.9
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 3.8e-85 318.5 209 71.8
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 7.2e-84 314.3 210 72.4
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.2e-83 313.5 212 73.1
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.6e-83 313.2 210 71.0
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.0e-82 310.5 215 70.2
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.3e-82 309.3 206 71.4
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 3.9e-82 308.5 203 70.9
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 5.1e-82 308.1 209 71.3
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.3e-81 305.1 212 67.9
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 9.7e-81 303.9 184 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 6.9e-79 297.7 203 67.0
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.0e-77 291.6 178 80.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.4e-76 290.0 193 75.6
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.4e-76 290.0 215 65.6
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.4e-74 283.5 203 65.0
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.1e-74 281.6 169 77.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.7e-74 281.2 206 66.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 6.7e-74 281.2 175 75.4
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 67.5
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 7.4e-73 277.7 203 67.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.4e-71 272.7 166 75.9
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.8e-66 256.5 253 53.8
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.3e-64 250.4 157 76.4
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.8e-63 246.5 157 76.4
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 4.5e-62 241.9 157 75.8
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.5e-60 236.9 193 61.7
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.6e-54 216.9 138 71.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 5.0e-53 211.8 211 48.3
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 7.2e-52 208.0 182 55.5
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.0e-50 204.1 208 50.5
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 5.4e-47 191.8 156 62.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 9.2e-47 191.0 127 71.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 9.2e-47 191.0 127 71.7
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.3e-45 187.2 142 64.8
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 8.0e-43 177.9 213 46.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.9e-38 161.8 223 42.2
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.9e-38 161.8 223 42.2
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 2.8e-35 152.9 95 76.8
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 9.5e-28 127.9 196 38.8
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.7e-21 107.1 104 57.7
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 9.5e-20 101.3 89 55.1
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 4.4e-17 92.4 65 61.5
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.3e-16 90.9 51 82.4
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.7e-16 90.5 51 82.4
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 7.1e-15 85.1 72 59.7
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 6.0e-14 82.0 57 66.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.0e-13 81.3 53 73.6
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-13 80.5 65 61.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 6.9e-10 68.6 46 65.2
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.6e-09 66.6 38 78.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 2.2e-08 63.5 36 75.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 4.2e-07 59.3 39 71.8
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.4e-07 58.9 134 33.6
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 7.1e-07 58.5 52 57.7
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 7.1e-07 58.5 33 75.8


User provided reference genes

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