Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.1e-100 371.7 617 100.0
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 7.4e-73 279.3 604 94.7
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 4.7e-35 153.7 112 70.5
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 7.5e-33 146.4 117 64.1
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 7.5e-33 146.4 149 55.7
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 6.3e-32 143.3 114 64.9
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 3.5e-30 137.5 112 59.8
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 3.5e-30 137.5 116 60.3
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.0e-29 136.0 116 59.5
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.0e-29 136.0 116 59.5
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.5e-28 132.1 114 58.8
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.5e-28 131.3 100 64.0
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 2.5e-28 131.3 111 62.2
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 2.5e-28 131.3 116 58.6
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 7.2e-28 129.8 105 63.8
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 2.7e-27 127.9 115 57.4
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.7e-27 127.1 114 57.0
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.7e-27 127.1 117 58.1
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.8e-26 125.2 114 56.1
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.0e-26 124.4 98 62.2
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.0e-26 124.0 112 53.6
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-25 122.5 116 56.9
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 3.4e-25 120.9 93 64.5
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.4e-25 120.6 116 56.0
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.7e-24 118.6 116 51.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 1.7e-24 118.6 91 63.7
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 2.2e-24 118.2 108 51.9
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.2e-24 118.2 116 56.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.7e-24 117.5 105 60.0
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 8.3e-24 116.3 79 73.4
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.4e-23 115.5 105 57.1
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 1.4e-23 115.5 117 55.6
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 4.1e-23 114.0 98 57.1
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 2.0e-22 111.7 105 51.4
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 2.7e-22 111.3 110 54.5
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 3.5e-22 110.9 100 61.0
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.5e-22 110.5 95 55.8
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 1.0e-21 109.4 123 53.7
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.0e-21 109.4 94 57.4
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.0e-21 109.4 102 52.0
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.7e-21 108.6 109 59.6
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 1.7e-21 108.6 92 57.6
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 1.7e-21 108.6 92 57.6
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 1.7e-21 108.6 77 70.1
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.2e-21 108.2 78 67.9
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 2.2e-21 108.2 106 51.9
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 2.2e-21 108.2 106 53.8
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.9e-21 107.8 106 53.8
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 2.9e-21 107.8 74 71.6
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 3.8e-21 107.5 105 53.3
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 3.8e-21 107.5 108 57.4
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 3.8e-21 107.5 108 57.4
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.0e-21 107.1 76 69.7
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 5.0e-21 107.1 111 52.3
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 5.0e-21 107.1 75 70.7
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 5.0e-21 107.1 108 53.7
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 6.5e-21 106.7 109 57.8
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 6.5e-21 106.7 108 57.4
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 6.5e-21 106.7 108 57.4
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 6.5e-21 106.7 75 70.7
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 6.5e-21 106.7 106 53.8
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 6.5e-21 106.7 108 51.9
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 8.5e-21 106.3 107 53.3
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 8.5e-21 106.3 110 52.7
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.1e-20 105.9 113 47.8
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.5e-20 105.5 105 53.3
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.5e-20 105.5 108 52.8
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.9e-20 105.1 94 55.3
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.9e-20 105.1 92 56.5
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.2e-20 104.4 108 48.1
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 3.2e-20 104.4 111 52.3
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 4.2e-20 104.0 70 72.9
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 5.5e-20 103.6 104 54.8
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 9.5e-20 102.8 114 46.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 9.5e-20 102.8 124 43.5
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.2e-19 102.4 106 48.1
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-19 102.4 106 48.1
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-19 102.4 106 48.1
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 1.2e-19 102.4 107 49.5
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.1e-19 101.7 117 45.3
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.7e-19 100.5 83 61.4
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 4.7e-19 100.5 83 61.4
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 6.1e-19 100.1 97 51.5
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 6.1e-19 100.1 91 57.1
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 8.0e-19 99.8 77 64.9
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 8.0e-19 99.8 96 52.1
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 8.0e-19 99.8 92 51.1
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.4e-18 99.0 98 51.0
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.8e-18 98.6 84 59.5
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.3e-18 98.2 89 55.1
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.3e-18 98.2 87 57.5
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 3.0e-18 97.8 88 56.8
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.0e-18 97.8 88 56.8
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.0e-18 97.8 93 54.8
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 5.2e-18 97.1 111 48.6
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 6.8e-18 96.7 74 63.5
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 6.8e-18 96.7 101 50.5
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.5e-17 95.5 86 55.8
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.5e-17 95.5 84 56.0
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 2.0e-17 95.1 101 49.5
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 3.4e-17 94.4 79 59.5
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 4.4e-17 94.0 94 48.9
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.4e-17 94.0 89 53.9
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 4.4e-17 94.0 88 52.3
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.4e-17 94.0 76 59.2
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 5.7e-17 93.6 103 46.6
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 7.5e-17 93.2 113 45.1
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 9.8e-17 92.8 78 59.0
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.3e-16 92.4 76 61.8
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.3e-16 92.4 101 49.5
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.7e-16 92.0 77 55.8
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.7e-16 92.0 76 59.2
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.7e-16 92.0 73 58.9
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 1.7e-16 92.0 81 59.3
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.8e-16 91.3 87 54.0
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 3.7e-16 90.9 94 46.8
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 4.9e-16 90.5 88 50.0
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.3e-16 90.1 91 47.3
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 6.3e-16 90.1 88 50.0
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 8.3e-16 89.7 81 55.6
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 8.3e-16 89.7 76 55.3
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 8.3e-16 89.7 76 55.3
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 8.3e-16 89.7 76 55.3
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 8.3e-16 89.7 76 55.3
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 8.3e-16 89.7 76 55.3
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 1.1e-15 89.4 70 65.7
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.4e-15 89.0 78 55.1
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.4e-15 89.0 78 55.1
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.8e-15 88.6 91 46.2
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.8e-15 88.6 80 52.5
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.8e-15 88.6 78 55.1
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 2.4e-15 88.2 67 65.7
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 2.4e-15 88.2 76 55.3
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.4e-15 88.2 79 55.7
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.1e-15 87.4 67 62.7
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 5.4e-15 87.0 75 56.0
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 7.0e-15 86.7 95 44.2
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 7.0e-15 86.7 113 45.1
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 7.0e-15 86.7 75 58.7
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 9.2e-15 86.3 76 52.6
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-14 85.9 133 39.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.6e-14 85.5 76 57.9
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 4.5e-14 84.0 76 50.0
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 4.5e-14 84.0 84 46.4
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 5.9e-14 83.6 77 50.6
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 5.9e-14 83.6 67 61.2
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 7.7e-14 83.2 80 48.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.7e-14 83.2 77 51.9
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 7.7e-14 83.2 90 46.7
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.0e-13 82.8 56 73.2
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.3e-13 81.6 87 47.1
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.9e-13 81.3 147 33.3
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 5.0e-13 80.5 92 44.6
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.0e-13 80.5 57 63.2
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 6.6e-13 80.1 78 50.0
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 8.6e-13 79.7 56 69.6
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 3.3e-12 77.8 48 77.1
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 5.6e-12 77.0 90 42.2
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 9.5e-12 76.3 56 60.7
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.2e-11 75.9 134 35.8
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 2.1e-11 75.1 68 52.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 2.1e-11 75.1 76 47.4
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.8e-11 74.7 121 36.4
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.6e-11 74.3 69 50.7
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 8.0e-11 73.2 69 49.3
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 8.0e-11 73.2 71 52.1
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.8e-10 72.0 69 47.8
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.3e-10 71.6 126 34.9
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 6.8e-10 70.1 79 43.0
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.2e-09 69.3 60 53.3
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 1.5e-09 68.9 71 50.7
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 3.4e-09 67.8 57 56.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.5e-09 66.6 57 52.6
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 2.2e-08 65.1 68 44.1
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 4.9e-08 63.9 49 59.2
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 8.3e-08 63.2 66 45.5
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 8.3e-08 63.2 66 45.5
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.1e-07 62.8 118 29.7
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 1.4e-07 62.4 48 58.3
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.4e-07 61.6 109 34.9
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 3.2e-07 61.2 48 64.6
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 2.7e-06 58.2 66 43.9
SEGI_12691 Sequoiadendron giganteum HOM05D003689 ORTHO05D003950 2.7e-06 58.2 55 52.7


User provided reference genes

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