Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.3e-263 912.5 469 100.0
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 3.9e-244 847.8 461 94.1
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 2.3e-199 699.1 471 76.6
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 3.4e-195 685.3 471 75.6
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 5.8e-195 684.5 471 75.6
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.2e-193 678.7 472 75.4
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 3.6e-189 665.2 475 74.5
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 8.1e-189 664.1 469 76.5
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.4e-188 663.3 459 75.8
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 6.8e-188 661.0 469 72.9
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 8.9e-188 660.6 472 73.7
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 2.6e-187 659.1 473 74.2
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-187 658.7 459 75.6
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 9.9e-187 657.1 466 75.1
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 1.3e-186 656.8 469 73.3
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 3.8e-186 655.2 446 76.9
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 4.9e-186 654.8 469 74.6
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 6.4e-186 654.4 470 74.9
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 2.3e-183 646.0 408 79.9
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 6.6e-183 644.4 471 71.1
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 2.5e-182 642.5 453 73.3
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 4.3e-182 641.7 469 72.5
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 5.6e-182 641.3 467 72.2
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.2e-181 640.2 469 72.9
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.1e-180 637.1 467 71.9
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.8e-180 636.3 469 72.1
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 3.1e-180 635.6 467 71.7
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 5.3e-180 634.8 379 82.8
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 2.0e-179 632.9 462 71.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 4.4e-179 631.7 374 85.0
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 4.4e-179 631.7 471 72.6
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 9.9e-179 630.6 476 70.8
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 9.9e-179 630.6 467 71.3
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 9.9e-179 630.6 471 72.6
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 2.9e-178 629.0 471 72.0
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 4.9e-178 628.2 415 76.4
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.1e-177 627.1 472 71.4
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 1.4e-177 626.7 471 72.0
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 1.9e-177 626.3 470 70.4
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.6e-176 623.2 473 70.2
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 2.1e-176 622.9 470 70.4
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 2.7e-176 622.5 472 69.9
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 4.6e-176 621.7 469 71.4
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 4.6e-176 621.7 473 71.0
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 7.8e-176 620.9 482 70.1
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.3e-175 620.2 472 69.7
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 3.9e-175 618.6 450 71.6
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 8.7e-175 617.5 458 69.7
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 8.7e-175 617.5 469 70.6
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.5e-174 616.7 458 69.7
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 1.9e-174 616.3 484 68.2
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.9e-174 616.3 467 70.2
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 4.3e-174 615.1 468 69.4
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 7.3e-174 614.4 389 79.2
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 7.3e-174 614.4 470 68.9
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 9.6e-174 614.0 496 65.9
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 1.6e-173 613.2 466 69.1
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 3.1e-172 609.0 466 70.2
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 3.1e-172 609.0 473 69.6
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 9.0e-172 607.4 378 79.9
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 7.6e-171 604.4 466 68.2
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.3e-170 603.6 373 78.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.7e-170 603.2 469 70.6
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.9e-170 602.4 466 68.2
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 4.2e-169 598.6 471 69.0
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 1.2e-168 597.0 409 73.8
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 1.6e-168 596.7 466 67.6
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.3e-167 593.6 435 70.3
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 1.8e-167 593.2 423 70.7
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 2.3e-167 592.8 463 68.7
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 3.0e-167 592.4 421 71.5
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 2.5e-166 589.3 411 71.8
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 4.3e-166 588.6 468 66.2
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 9.6e-166 587.4 461 67.0
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-165 587.0 401 74.3
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.6e-165 586.6 395 73.2
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 4.0e-164 582.0 448 66.5
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 5.3e-164 581.6 469 64.0
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 6.9e-164 581.3 447 66.4
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 6.9e-164 581.3 379 75.7
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.2e-163 580.5 472 64.8
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.2e-163 580.5 475 65.5
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 2.6e-163 579.3 475 66.7
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 8.4e-162 574.3 472 63.8
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 2.5e-161 572.8 413 69.5
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.5e-161 572.8 474 64.1
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 1.0e-159 567.4 406 70.2
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.0e-159 567.4 432 67.4
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.8e-159 566.6 392 73.2
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 3.0e-159 565.8 463 68.9
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 5.6e-158 561.6 466 64.2
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.6e-157 560.1 475 62.9
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 2.8e-157 559.3 475 62.7
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 2.8e-157 559.3 475 62.7
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 6.9e-156 554.7 473 62.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 6.9e-156 554.7 473 62.2
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 8.5e-146 521.2 314 82.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 7.9e-144 514.6 466 59.2
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 4.3e-142 508.8 397 64.2
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.2e-141 506.5 394 63.7
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 9.1e-140 501.1 474 56.3
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.5e-137 493.0 343 72.3
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 3.9e-135 485.7 393 66.4
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.7e-107 393.3 379 53.8
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 5.0e-106 389.0 437 52.4
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 4.7e-104 382.5 363 53.7
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 8.0e-104 381.7 254 75.2
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 6.8e-103 378.6 409 47.4
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 3.4e-102 376.3 416 49.0
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.0e-95 352.8 389 48.6
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 2.4e-92 343.6 371 51.5
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.2e-78 298.1 382 44.8
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.5e-78 297.7 342 46.8
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.4e-76 291.2 382 45.3
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 9.9e-62 241.9 138 80.4
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.0e-45 188.7 311 42.8
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 1.3e-40 171.8 99 75.8
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 8.2e-40 169.1 104 80.8
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.0e-30 137.9 83 85.5
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.0e-29 135.6 83 84.3
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 8.5e-29 132.5 259 36.3
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.0e-26 125.6 350 31.4
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.7e-26 122.9 83 73.5
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.1e-25 122.1 82 74.4
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 4.3e-25 120.2 89 73.0
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.7e-24 117.1 137 56.2
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 3.1e-23 114.0 148 54.7
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 5.5e-20 103.2 367 27.8
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 7.9e-19 99.4 128 52.3
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.6e-14 84.3 83 56.6
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 5.5e-12 76.6 53 67.9
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 3.5e-06 57.4 52 55.8


User provided reference genes

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