Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 4.8e-63 244.6 148 100.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.7e-28 129.8 158 63.3
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.4e-25 120.2 113 60.2
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.8e-25 119.8 160 60.0
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.9e-23 111.7 109 56.9
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-22 110.5 89 65.2
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 1.1e-22 110.5 89 65.2
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 1.1e-22 110.5 89 65.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.4e-22 109.4 95 61.1
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.2e-22 109.0 123 56.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 5.4e-22 108.2 109 56.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 7.0e-22 107.8 61 78.7
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 9.2e-22 107.5 115 53.0
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 9.2e-22 107.5 114 52.6
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 9.2e-22 107.5 114 52.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 9.2e-22 107.5 115 54.8
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-21 107.1 61 78.7
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-21 107.1 61 78.7
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-21 107.1 61 78.7
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.7e-21 105.9 94 59.6
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-21 105.5 92 60.9
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 7.8e-21 104.4 128 51.6
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.7e-20 103.2 101 57.4
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-20 102.1 125 66.4
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 5.1e-20 101.7 62 75.8
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.1e-19 100.5 106 53.8
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-19 100.5 125 65.6
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.5e-19 100.1 134 51.5
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 1.5e-19 100.1 104 57.7
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.9e-19 99.8 125 65.6
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.9e-19 99.8 121 49.6
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.5e-19 99.4 112 52.7
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 4.3e-19 98.6 56 80.4
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 5.6e-19 98.2 124 50.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.5e-19 97.4 125 61.6
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.8e-18 95.9 78 61.5
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.8e-18 95.9 53 83.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.8e-18 95.9 53 83.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.8e-18 95.9 52 82.7
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.6e-18 95.5 148 53.4
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.7e-18 95.1 125 60.8
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 6.2e-18 94.7 68 73.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.1e-17 94.0 52 80.8
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.1e-17 94.0 48 87.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.8e-17 93.2 102 54.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.8e-17 91.3 53 81.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 6.8e-17 91.3 102 53.9
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 6.8e-17 91.3 120 60.0
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.4e-16 89.0 109 50.5
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.4e-16 89.0 111 46.8
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 4.4e-16 88.6 101 55.4
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.8e-16 88.2 122 45.9
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.5e-16 87.8 64 67.2
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 7.5e-16 87.8 85 77.6
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.7e-15 86.7 91 54.9
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.7e-15 86.7 148 52.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.7e-15 86.7 146 53.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.7e-15 86.7 74 60.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.7e-15 86.7 58 69.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.2e-15 86.3 157 52.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.2e-15 86.3 99 51.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.7e-15 85.5 57 71.9
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.4e-15 84.7 157 52.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 6.4e-15 84.7 106 46.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 6.4e-15 84.7 150 54.7
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.1e-14 84.0 146 51.4
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.4e-14 83.6 107 46.7
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.9e-14 83.2 97 55.7
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.4e-14 82.8 86 72.1
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 3.2e-14 82.4 101 48.5
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.1e-14 82.0 50 78.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.4e-14 81.6 155 51.6
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 7.1e-14 81.3 49 73.5
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.1e-14 81.3 108 48.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 7.1e-14 81.3 46 80.4
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.2e-13 80.5 43 81.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.2e-13 80.5 111 47.7
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.2e-13 80.5 65 60.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.2e-13 80.5 121 51.2
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.6e-13 80.1 87 54.0
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.1e-13 79.7 108 46.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.1e-13 79.7 89 50.6
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.7e-13 79.3 53 73.6
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 2.7e-13 79.3 101 50.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.7e-13 79.3 112 49.1
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 3.5e-13 79.0 39 89.7
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 3.5e-13 79.0 105 49.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 4.6e-13 78.6 111 48.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.6e-13 78.6 121 44.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.0e-13 78.2 42 83.3
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.0e-13 78.2 59 64.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 7.8e-13 77.8 115 45.2
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.0e-12 77.4 48 70.8
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.3e-12 77.0 45 77.8
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.3e-12 77.0 79 73.4
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.0e-12 75.9 58 63.8
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 3.0e-12 75.9 91 52.7
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.9e-12 75.5 80 52.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 3.9e-12 75.5 58 65.5
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 5.1e-12 75.1 42 81.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 6.6e-12 74.7 90 47.8
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.6e-12 74.3 50 72.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 8.6e-12 74.3 98 48.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 8.6e-12 74.3 43 74.4
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.5e-11 73.6 53 64.2
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.3e-11 72.4 121 43.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 4.3e-11 72.0 114 44.7
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.3e-11 72.0 35 91.4
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 4.3e-11 72.0 91 47.3
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 5.6e-11 71.6 69 58.0
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 5.6e-11 71.6 43 72.1
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 9.5e-11 70.9 42 73.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 9.5e-11 70.9 89 65.2
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.2e-10 70.5 41 73.2
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.2e-10 70.5 37 83.8
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.6e-10 70.1 35 85.7
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.1e-10 69.7 35 88.6
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.1e-10 69.7 35 88.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.1e-10 69.7 98 50.0
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 2.8e-10 69.3 40 77.5
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.6e-10 68.9 40 75.0
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 4.7e-10 68.6 36 77.8
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 8.1e-10 67.8 50 62.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.8e-09 66.6 98 42.9
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 3.1e-09 65.9 169 45.0
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 3.1e-09 65.9 84 46.4
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 2.0e-08 63.2 111 37.8
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.4e-08 62.0 105 42.9


User provided reference genes

Program Settings