Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 4.6e-275 950.7 503 100.0
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 2.3e-226 788.9 487 86.9
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.0e-133 479.6 485 56.9
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.5e-116 424.1 483 52.2
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.9e-112 409.8 481 50.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 6.1e-110 402.1 489 49.1
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 6.1e-110 402.1 458 53.3
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.2e-105 387.9 470 47.9
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 3.5e-105 386.3 470 48.9
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 6.0e-105 385.6 487 49.1
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 3.9e-104 382.9 481 47.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 6.6e-104 382.1 466 47.6
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 8.6e-104 381.7 483 47.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.9e-103 380.6 481 47.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.9e-103 380.6 481 47.0
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 3.3e-103 379.8 474 48.9
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 4.3e-103 379.4 489 47.6
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.2e-102 377.9 475 47.4
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.7e-102 375.9 475 48.0
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 1.2e-100 371.3 494 47.2
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-100 371.3 476 47.7
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 5.8e-100 369.0 550 43.5
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 4.9e-99 365.9 446 50.7
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 8.3e-99 365.2 456 48.7
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 4.1e-98 362.8 449 49.4
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 3.9e-96 356.3 481 46.2
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.7e-94 349.4 491 46.2
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 6.8e-93 345.5 542 42.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 4.1e-90 336.3 462 46.1
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 1.2e-89 334.7 488 45.5
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 4.6e-89 332.8 484 44.2
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.7e-88 330.9 489 44.6
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.7e-88 330.9 487 43.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.5e-87 327.8 485 43.1
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.5e-87 327.0 460 45.7
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 3.3e-87 326.6 457 47.7
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 3.3e-87 326.6 464 44.4
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 4.3e-87 326.2 464 44.4
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 5.6e-87 325.9 489 44.0
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 9.5e-87 325.1 466 45.9
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 9.5e-87 325.1 467 46.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 6.2e-86 322.4 515 42.3
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 6.2e-86 322.4 469 44.8
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.4e-85 320.5 464 43.8
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 5.2e-85 319.3 481 43.0
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.8e-85 318.9 481 42.4
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 2.0e-84 317.4 529 40.5
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.0e-84 317.4 490 42.4
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 5.8e-84 315.8 474 43.7
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 1.3e-83 314.7 484 44.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 2.2e-83 313.9 461 44.0
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 8.4e-83 312.0 468 43.4
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 1.1e-82 311.6 472 41.3
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.9e-82 310.8 492 41.9
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 4.1e-82 309.7 484 42.4
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 5.1e-80 302.8 474 41.8
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 6.6e-80 302.4 468 42.3
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 8.7e-80 302.0 484 40.9
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.1e-79 301.6 442 43.4
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 5.6e-79 299.3 454 44.5
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 9.6e-79 298.5 446 44.8
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.5e-76 291.2 474 40.9
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 5.8e-76 289.3 490 41.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 3.8e-75 286.6 472 41.5
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.1e-74 285.0 468 41.0
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 3.2e-74 283.5 524 40.8
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 1.3e-72 278.1 487 39.0
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 2.5e-71 273.9 491 40.7
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.3e-70 271.6 475 38.7
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.3e-70 271.6 455 39.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.6e-70 271.2 481 41.2
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.6e-70 271.2 481 41.2
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 6.2e-70 269.2 507 39.4
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 8.1e-70 268.9 474 39.7
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 8.1e-70 268.9 481 41.0
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 8.1e-70 268.9 489 40.3
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.4e-69 268.1 483 40.8
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.4e-69 268.1 483 40.8
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.4e-69 268.1 216 62.0
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 5.3e-69 266.2 484 40.1
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 3.4e-68 263.5 487 39.4
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 3.4e-68 263.5 464 38.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.4e-66 258.1 488 39.1
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 1.4e-66 258.1 412 42.7
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 4.2e-66 256.5 484 39.3
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 7.1e-66 255.8 496 38.5
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 6.7e-64 249.2 471 38.9
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.9e-63 247.7 189 66.1
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.1e-62 244.2 389 41.1
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.7e-62 243.4 418 39.2
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 3.1e-61 240.4 478 37.9
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 3.4e-60 236.9 485 36.7
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 7.6e-60 235.7 492 37.4
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.2e-58 229.9 452 38.3
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.7e-57 227.3 504 35.1
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 7.1e-50 202.6 195 52.8
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 5.3e-45 186.4 331 38.7
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 2.1e-33 147.9 177 44.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 2.3e-32 144.4 279 34.8
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 4.4e-31 140.2 429 31.2
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 4.4e-31 140.2 429 31.2
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 3.7e-30 137.1 120 58.3
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.6e-28 131.0 223 41.7
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 5.0e-27 126.7 167 46.1
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.8e-22 110.2 113 49.6
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.4e-21 108.6 139 48.9
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 9.1e-21 105.9 125 48.8
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 1.2e-20 105.5 123 48.0
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.0e-20 104.8 295 33.6
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 3.2e-18 97.4 70 60.0
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.4e-15 87.0 111 49.5
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 6.3e-14 83.2 78 50.0
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 4.1e-13 80.5 99 48.5
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.3e-13 80.1 179 33.0
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.6e-12 78.6 179 33.5
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.0e-12 78.2 550 23.6
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 2.7e-12 77.8 70 54.3
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 2.5e-10 71.2 66 56.1
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 2.7e-09 67.8 64 53.1
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 4.0e-08 63.9 127 29.9
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 2.6e-07 61.2 260 26.9
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.4e-07 60.5 122 32.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.7e-06 58.5 314 24.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.7e-06 58.5 205 27.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.8e-06 57.0 136 31.6
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 8.3e-06 56.2 43 60.5


User provided reference genes

Program Settings