Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.4e-107 392.9 186 100.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.7e-102 375.9 185 94.6
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.5e-98 362.8 183 90.2
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.3e-97 359.8 186 88.7
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.1e-96 356.7 186 87.6
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.4e-96 355.5 183 86.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.4e-96 355.5 183 86.9
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.2e-95 353.2 186 86.0
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.2e-95 353.2 185 84.9
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.3e-94 349.7 179 86.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.3e-94 349.0 183 85.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.3e-94 349.0 178 86.5
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.0e-94 348.6 183 84.2
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 3.9e-94 348.2 183 85.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.3e-93 345.1 186 81.7
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.6e-92 342.8 183 82.5
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.6e-92 342.8 182 85.2
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.1e-92 340.5 186 82.3
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.1e-92 340.5 186 82.3
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.4e-91 339.7 186 81.7
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.8e-91 339.3 199 79.4
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 9.0e-91 337.0 183 80.3
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.2e-90 336.7 183 80.9
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.2e-90 336.7 183 80.9
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.6e-90 335.5 184 82.6
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.6e-90 335.5 183 82.5
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.3e-89 333.2 183 82.0
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-89 332.8 184 82.1
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.2e-89 332.4 183 82.0
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 82.1
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 2.2e-89 332.4 183 82.0
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 82.1
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.9e-89 331.3 183 82.0
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.9e-89 331.3 182 81.9
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 4.9e-89 331.3 182 81.3
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 8.4e-89 330.5 183 80.3
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.4e-89 330.5 184 81.0
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 8.4e-89 330.5 183 79.2
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.4e-88 329.7 182 81.9
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.4e-88 329.7 183 78.7
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.4e-88 328.9 186 78.5
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 4.2e-88 328.2 176 81.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 4.2e-88 328.2 183 80.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 5.4e-88 327.8 178 83.7
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 9.3e-88 327.0 187 80.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 9.3e-88 327.0 187 80.7
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-87 326.2 203 75.9
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.6e-87 326.2 179 83.2
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.6e-87 326.2 179 83.2
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.1e-87 325.9 183 80.3
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.1e-87 325.9 186 78.5
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.7e-87 325.5 183 78.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 6.0e-87 324.3 184 81.0
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 7.9e-87 323.9 183 78.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 7.9e-87 323.9 183 78.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-86 323.2 179 78.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-86 323.2 176 80.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-86 323.2 176 80.1
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.3e-86 323.2 181 78.5
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.3e-86 323.2 183 78.1
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-86 322.8 184 78.8
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.8e-86 322.8 182 78.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.3e-86 322.4 179 78.8
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.3e-86 322.4 179 81.6
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.3e-86 322.4 177 81.4
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 3.9e-86 321.6 179 78.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 3.9e-86 321.6 176 79.5
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 5.1e-86 321.2 183 78.7
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 5.1e-86 321.2 181 80.1
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 8.7e-86 320.5 179 77.7
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.1e-85 320.1 186 78.0
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.9e-85 319.3 179 77.1
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.9e-85 319.3 175 80.6
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.5e-85 318.9 179 77.7
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 2.5e-85 318.9 179 77.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-85 318.5 183 78.7
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 3.3e-85 318.5 182 77.5
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 4.3e-85 318.2 179 77.7
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.6e-85 317.8 183 78.7
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 5.6e-85 317.8 154 94.8
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 7.4e-85 317.4 179 81.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.3e-84 316.6 179 77.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.1e-84 315.8 176 76.7
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.8e-83 312.8 178 76.4
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.8e-83 312.8 177 80.2
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.1e-83 312.0 197 73.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 6.9e-83 310.8 181 76.2
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.0e-83 310.5 204 71.1
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.5e-82 309.7 215 67.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.8e-81 305.1 183 74.9
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.8e-81 305.1 183 74.9
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.4e-80 302.4 168 79.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.2e-79 300.1 225 64.4
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.6e-79 299.7 225 64.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-79 298.9 163 83.4
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 6.0e-79 297.7 183 72.7
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 6.0e-79 297.7 154 85.1
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.0e-78 297.0 154 85.7
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 7.4e-77 290.8 180 71.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 6.2e-76 287.7 181 74.6
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 4.0e-75 285.0 181 75.1
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 5.3e-75 284.6 163 77.9
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 2.0e-74 282.7 179 69.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.7e-73 279.6 186 67.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 3.8e-73 278.5 151 80.8
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.8e-73 278.5 171 75.4
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 6.5e-73 277.7 155 79.4
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.5e-73 277.7 175 70.3
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.5e-73 277.7 175 70.3
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.5e-73 277.7 198 66.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 7.1e-72 274.2 206 63.1
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 7.9e-71 270.8 149 77.9
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 7.9e-71 270.8 149 79.2
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 4.8e-68 261.5 183 66.1
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.1e-67 260.4 280 50.4
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.1e-67 258.5 146 78.1
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.9e-65 252.3 182 61.5
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 8.5e-65 250.8 138 78.3
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 6.1e-63 244.6 170 67.6
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.8e-57 225.3 119 84.9
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 3.8e-57 225.3 184 53.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.4e-56 223.4 194 60.3
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-56 223.0 180 56.7
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 5.5e-56 221.5 182 54.9
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.9e-54 215.3 182 58.8
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 5.0e-49 198.4 203 51.7
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.0e-45 186.4 184 55.4
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-45 186.4 175 45.7
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-45 186.4 175 45.7
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.7e-45 184.9 206 43.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 1.7e-44 183.3 123 65.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.0e-43 177.9 91 84.6
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-42 177.2 142 60.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.5e-41 171.0 89 84.3
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 9.4e-40 167.5 209 40.2
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.0e-38 164.1 178 39.9
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.0e-38 164.1 164 47.6
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 5.2e-38 161.8 182 38.5
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.1e-35 152.5 142 45.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.1e-35 151.0 147 53.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.0e-34 149.8 93 65.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.2e-29 134.0 93 62.4
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 9.8e-13 77.8 46 71.7
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 4.1e-11 72.4 44 75.0
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.0e-09 67.8 43 74.4


User provided reference genes

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