Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.5e-188 660.6 343 100.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.0e-169 598.6 345 90.7
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 8.9e-169 597.0 413 79.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.5e-163 579.7 345 87.0
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 1.2e-160 570.1 345 84.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.9e-159 565.5 345 83.5
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 2.9e-159 565.5 345 84.1
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 6.4e-159 564.3 344 83.7
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 9.2e-158 560.5 345 82.0
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-157 560.1 345 82.0
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.6e-157 559.7 345 82.0
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.5e-157 558.5 345 81.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.7e-156 556.2 345 82.0
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.7e-156 556.2 345 82.0
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 3.0e-156 555.4 345 83.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.5e-155 552.4 345 83.8
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.3e-155 551.6 345 82.0
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-154 550.1 345 81.7
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 8.1e-154 547.4 345 80.9
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 3.1e-153 545.4 345 82.3
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.2e-152 543.5 346 80.6
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 80.0
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.6e-152 542.3 348 79.9
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 4.4e-152 541.6 345 80.6
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.3e-151 540.0 345 80.3
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.2e-151 539.3 346 79.8
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.9e-151 538.9 347 80.7
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 2.9e-151 538.9 345 80.0
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 4.9e-151 538.1 345 80.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 8.3e-151 537.3 343 79.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 9.2e-150 533.9 344 79.9
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.2e-149 533.5 343 79.9
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.2e-149 533.5 343 79.3
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-149 533.1 345 79.4
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.6e-149 533.1 345 79.4
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.1e-147 526.9 343 77.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 78.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 7.3e-147 524.2 346 78.9
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.6e-146 523.1 343 77.0
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.6e-146 523.1 343 77.0
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 3.6e-146 521.9 343 76.1
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.6e-146 521.9 343 76.7
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 4.7e-146 521.5 343 76.4
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.4e-145 520.0 337 79.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.8e-145 519.6 350 76.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.1e-145 518.8 343 76.1
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 3.1e-145 518.8 343 76.1
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 3.1e-145 518.8 343 76.1
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 6.8e-145 517.7 343 75.8
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 6.8e-145 517.7 345 75.9
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 8.9e-145 517.3 343 75.8
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 8.9e-145 517.3 343 75.8
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 8.9e-145 517.3 343 75.8
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.6e-144 515.8 345 77.1
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 4.4e-144 515.0 343 75.2
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 4.4e-144 515.0 346 76.6
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 7.6e-144 514.2 345 75.7
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.3e-143 513.5 337 79.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.7e-143 513.1 343 74.6
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.2e-143 512.7 355 73.8
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.2e-143 512.7 345 76.5
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 2.9e-143 512.3 346 76.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.8e-143 511.9 341 75.7
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 3.8e-143 511.9 345 76.2
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.9e-142 509.6 392 69.9
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 2.4e-142 509.2 345 75.7
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.4e-142 509.2 367 73.8
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.4e-142 508.1 345 74.8
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 7.1e-142 507.7 344 75.3
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 9.2e-142 507.3 344 75.6
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.6e-141 506.5 343 77.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.5e-141 505.4 355 72.7
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 7.8e-141 504.2 345 75.1
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.3e-140 503.4 345 73.6
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 5.1e-140 501.5 343 75.5
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 8.7e-140 500.7 343 76.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.1e-139 500.4 350 73.1
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.5e-139 500.0 345 74.8
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 76.4
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 73.0
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.6e-139 498.0 344 72.7
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.3e-139 497.7 336 74.7
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.1e-138 496.1 325 78.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.1e-137 492.3 357 70.9
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 5.3e-137 491.5 345 73.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.2e-136 490.3 343 74.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 3.4e-136 488.8 343 73.8
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.9e-134 483.0 418 66.3
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.4e-134 482.6 345 74.5
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 1.7e-132 476.5 272 87.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 7.3e-131 471.1 336 71.7
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-130 469.9 308 76.3
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.1e-130 469.5 306 79.1
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.6e-130 468.8 311 77.8
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.9e-127 459.1 336 71.4
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.9e-127 458.4 344 68.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.2e-126 455.7 308 75.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 6.7e-124 448.0 272 80.5
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-120 437.2 345 67.8
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 2.6e-120 436.0 344 66.9
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.7e-119 433.3 343 66.5
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.7e-117 426.0 295 76.6
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 5.1e-116 421.8 400 61.2
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.7e-116 421.0 345 64.9
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-114 417.2 345 64.9
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 5.3e-113 411.8 328 68.9
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.3e-113 411.8 292 74.3
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 2.3e-108 396.4 222 87.4
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 8.5e-103 377.9 343 60.9
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.2e-101 374.0 384 53.4
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 8.8e-100 367.9 222 81.1
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.0e-95 352.1 345 58.0
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.5e-94 349.7 204 85.3
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.0e-92 342.8 246 72.0
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.2e-85 320.9 396 53.0
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.7e-82 309.3 344 52.6
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.8e-82 308.9 337 51.9
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.5e-78 296.6 249 61.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.2e-75 287.7 249 63.1
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 9.7e-75 284.6 169 82.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 5.0e-71 272.3 200 68.5
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.0e-68 262.7 274 49.6
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.5e-64 249.6 256 55.5
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 2.8e-58 229.9 144 82.6
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.0e-56 223.8 159 67.3
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 7.8e-56 221.9 238 54.6
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.9e-55 219.5 164 70.7
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.9e-50 203.4 192 55.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.5e-48 196.4 345 35.9
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.1e-45 187.2 131 74.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.8e-44 184.1 110 83.6
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.3e-44 183.7 184 57.1
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 2.2e-42 177.2 332 34.6
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.1e-40 170.6 323 32.5
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.5e-40 169.9 317 35.0
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.9e-34 149.4 132 63.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.9e-30 137.5 113 66.4
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.5e-27 127.9 74 85.1
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.1e-25 121.7 95 70.5
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 3.6e-21 106.7 106 59.4
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.8e-21 106.3 73 69.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.2e-21 105.9 95 64.2


User provided reference genes

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