Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 9.5e-190 666.8 357 100.0
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 6.4e-170 600.9 436 77.8
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 4.5e-155 551.6 355 82.3
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 8.4e-154 547.4 354 81.1
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 5.4e-153 544.7 355 80.0
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 5.6e-150 534.6 351 82.3
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.6e-149 533.1 341 82.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 4.0e-148 528.5 357 79.3
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 5.8e-147 524.6 357 78.7
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 9.9e-147 523.9 358 79.1
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 9.3e-145 517.3 358 77.7
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.0e-143 513.8 354 76.0
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 6.7e-143 511.1 355 75.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 6.2e-141 504.6 346 76.6
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 6.9e-140 501.1 355 74.4
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.4e-139 498.8 346 76.9
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.0e-138 497.3 354 74.3
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.3e-138 496.9 354 75.1
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 1.3e-138 496.9 348 75.3
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.9e-138 495.7 355 74.9
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 8.4e-138 494.2 355 73.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.1e-137 493.8 329 78.4
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.9e-137 493.0 353 75.1
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.5e-137 492.7 355 75.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 7.1e-137 491.1 355 74.6
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.2e-136 490.3 351 76.6
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.7e-136 489.2 346 75.1
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.7e-136 489.2 341 77.7
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 2.7e-136 489.2 352 76.7
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.0e-135 485.7 355 74.1
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 3.0e-135 485.7 356 74.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 5.1e-135 485.0 355 74.4
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 6.7e-135 484.6 355 73.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.3e-134 482.3 337 76.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.3e-134 482.3 337 76.9
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.6e-133 479.9 355 73.2
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 3.7e-133 478.8 345 72.8
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 6.3e-133 478.0 345 72.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 8.2e-133 477.6 353 73.9
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 6.9e-132 474.6 356 71.9
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.5e-131 473.4 354 70.3
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 2.0e-131 473.0 392 67.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.6e-131 472.6 354 70.3
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.6e-131 472.6 355 73.0
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.6e-131 472.6 334 75.7
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.0e-130 470.7 330 73.6
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.3e-130 470.3 345 73.3
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.7e-130 469.9 355 72.7
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.9e-130 469.2 352 71.9
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 3.8e-130 468.8 346 72.8
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 8.5e-130 467.6 355 71.3
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.9e-129 466.5 329 76.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.5e-129 466.1 355 71.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.5e-129 464.9 350 70.6
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 5.5e-129 464.9 351 71.8
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 7.2e-129 464.5 346 71.1
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 1.2e-128 463.8 334 72.5
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.6e-128 463.4 355 71.3
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 2.7e-128 462.6 345 69.6
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.8e-127 459.9 350 69.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.3e-127 459.5 346 70.8
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 2.3e-127 459.5 349 70.2
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.3e-127 459.5 358 71.2
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 3.0e-127 459.1 342 72.2
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 8.7e-127 457.6 358 70.7
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 2.5e-126 456.1 346 70.8
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 3.3e-126 455.7 356 69.4
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.3e-126 455.7 350 69.4
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 7.4e-126 454.5 362 69.6
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 7.4e-126 454.5 351 70.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.3e-125 453.8 350 69.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.8e-125 452.6 348 71.0
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 6.3e-125 451.4 355 68.7
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.4e-124 450.3 354 69.5
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.8e-124 449.9 356 68.8
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 2.0e-123 446.4 378 65.6
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 2.0e-123 446.4 354 68.9
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.7e-122 443.4 346 69.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.2e-122 443.0 351 67.0
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.5e-121 439.5 345 67.5
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 2.5e-121 439.5 323 73.7
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 6.7e-119 431.4 365 66.3
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 7.4e-118 427.9 283 77.7
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.2e-117 426.4 343 67.3
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.8e-117 425.2 338 67.8
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 6.3e-117 424.9 299 76.9
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.8e-116 423.3 305 72.8
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.1e-116 421.0 346 67.1
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.0e-114 417.5 356 66.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.9e-114 416.0 305 73.1
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 5.0e-114 415.2 382 64.4
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 7.2e-113 411.4 342 64.0
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.8e-111 406.8 296 73.0
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 6.7e-111 404.8 413 59.8
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.1e-108 395.6 301 72.8
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.6e-107 392.9 321 66.4
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.5e-107 392.5 353 63.7
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.1e-105 387.5 333 64.6
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.5e-105 386.3 347 62.8
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 5.5e-105 385.2 275 76.0
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 9.4e-105 384.4 340 64.1
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.0e-103 380.9 295 71.5
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.2e-101 371.3 439 51.0
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.9e-97 360.1 398 58.3
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.5e-97 358.6 400 54.0
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 5.2e-95 352.1 235 78.7
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.5e-94 350.5 343 58.6
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 3.7e-93 345.9 248 71.4
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.4e-92 342.0 229 76.4
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 9.1e-92 341.3 349 54.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.0e-91 340.1 411 52.1
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.1e-89 334.3 250 74.4
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 4.0e-87 325.9 231 74.5
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 6.8e-87 325.1 259 69.5
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 7.0e-84 315.1 244 71.7
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.6e-80 303.9 277 63.2
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 4.0e-71 272.7 304 53.3
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.4e-70 269.6 333 47.4
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.3e-69 267.7 328 45.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 3.7e-69 266.2 185 77.3
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-68 263.5 238 58.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-68 263.5 204 66.2
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 7.0e-68 261.9 223 61.4
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.4e-62 243.0 337 43.3
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 6.2e-56 222.2 145 84.1
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 8.4e-53 211.8 148 72.3
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 6.0e-51 205.7 195 60.5
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 8.6e-50 201.8 150 67.3
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-47 193.7 170 66.5
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.6e-41 172.6 129 68.2
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.3e-34 151.4 112 76.8
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.7e-34 148.7 100 80.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.6e-33 146.0 118 73.7
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 7.4e-33 145.6 338 32.2
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 9.6e-25 118.6 181 44.8
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 4.8e-24 116.3 89 71.9
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 6.2e-24 115.9 231 34.2
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 5.8e-22 109.4 111 59.5
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.5e-17 94.0 93 51.6
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 6.3e-16 89.4 78 60.3
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 5.3e-15 86.3 52 86.5
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.0e-14 84.3 57 75.4
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.3e-13 81.6 50 76.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.2e-13 80.9 53 77.4
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 1.4e-12 78.2 57 68.4
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 3.0e-10 70.5 57 54.4
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 2.8e-08 63.9 88 37.5
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 4.8e-08 63.2 78 39.7
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 5.3e-07 59.7 74 50.0


User provided reference genes

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