Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.1e-107 393.3 201 100.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.3e-97 357.8 201 91.5
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.4e-92 343.2 201 88.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-92 343.2 201 87.6
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.1e-89 333.6 201 84.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-89 330.5 201 84.6
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-89 330.5 201 84.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.0e-88 329.3 223 78.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.5e-88 328.2 201 83.1
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-87 326.2 201 85.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.2e-87 325.9 201 81.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.8e-87 325.1 201 82.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.8e-87 325.1 201 82.6
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 5.0e-87 324.7 201 82.1
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.5e-87 324.3 201 80.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-86 323.2 199 81.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-86 322.4 201 84.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.5e-86 322.4 201 81.6
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.2e-86 322.0 201 82.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.2e-86 321.6 213 80.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 7.2e-86 320.9 201 81.6
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.7e-85 318.9 203 81.8
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.6e-85 318.5 201 80.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.7e-85 318.2 201 81.6
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.3e-84 315.8 201 81.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.0e-84 315.5 201 80.6
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.9e-84 315.1 201 80.1
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.9e-84 315.1 201 80.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-84 315.1 201 80.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.9e-84 315.1 201 80.1
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 8.8e-84 313.9 201 80.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 8.8e-84 313.9 201 80.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 8.8e-84 313.9 201 79.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 8.8e-84 313.9 201 80.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.0e-83 312.8 201 79.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.0e-83 312.8 203 79.8
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.0e-83 312.8 201 79.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.6e-83 312.4 201 79.6
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.6e-83 312.4 201 77.6
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.6e-83 312.4 201 78.1
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.6e-83 312.4 201 80.1
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.6e-83 312.4 201 77.6
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 5.7e-83 311.2 201 79.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 7.4e-83 310.8 201 81.6
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 7.4e-83 310.8 201 78.6
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 9.7e-83 310.5 201 81.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-82 309.3 201 78.6
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 2.8e-82 308.9 201 77.6
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.7e-82 308.5 201 78.6
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.8e-82 308.1 201 77.1
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 8.2e-82 307.4 201 79.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 8.2e-82 307.4 201 79.1
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 79.6
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 79.1
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 78.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 76.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 201 78.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.4e-81 306.6 200 77.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.8e-81 306.2 201 77.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 3.1e-81 305.4 201 78.6
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.1e-81 305.4 201 76.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.1e-81 305.4 204 75.0
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.3e-81 304.7 201 78.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.1e-81 303.9 190 82.6
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.6e-80 302.4 201 77.6
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.6e-80 302.4 201 76.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.5e-80 302.0 201 76.6
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.5e-80 301.6 202 79.7
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.5e-80 301.6 201 76.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.9e-80 301.2 201 75.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 5.9e-80 301.2 201 76.1
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 7.7e-80 300.8 202 78.2
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-79 300.4 201 76.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 201 75.6
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 2.2e-79 299.3 201 75.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.9e-79 298.9 201 77.1
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.5e-79 297.7 201 76.6
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 6.5e-79 297.7 201 74.6
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.1e-78 297.0 183 83.6
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.5e-78 296.6 202 77.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.9e-78 296.2 201 74.1
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.9e-78 296.2 201 74.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.9e-78 296.2 201 75.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.9e-78 296.2 201 73.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.2e-78 295.4 201 74.6
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 3.2e-78 295.4 204 73.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 3.2e-78 295.4 201 75.1
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.2e-78 295.0 199 74.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 9.4e-78 293.9 201 74.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-77 293.1 199 75.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-77 293.1 202 74.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.6e-77 293.1 201 74.6
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.1e-77 292.7 203 73.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.6e-77 292.0 201 74.1
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.1e-77 291.2 201 72.1
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.1e-77 291.2 200 72.5
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 6.1e-77 291.2 201 73.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 6.1e-77 291.2 201 76.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 8.0e-77 290.8 201 72.1
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 8.0e-77 290.8 201 73.6
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 217 71.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 201 73.1
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-76 290.0 202 75.2
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-76 290.0 201 74.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.4e-76 290.0 201 73.1
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.4e-76 290.0 201 74.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.8e-76 289.7 203 73.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.0e-76 288.9 209 71.3
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 4.0e-76 288.5 201 74.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 6.7e-76 287.7 201 73.6
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.8e-76 287.3 213 70.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.2e-75 287.0 189 76.7
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.5e-75 286.6 224 66.1
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.6e-75 285.8 201 72.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.6e-75 285.8 199 73.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.2e-74 282.7 201 72.1
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.8e-74 282.3 189 77.2
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.3e-74 281.2 201 73.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 6.3e-74 281.2 208 69.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 8.2e-74 280.8 202 71.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.8e-73 279.6 182 77.5
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.4e-73 279.3 201 71.1
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.4e-73 279.3 201 71.1
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.7e-72 275.8 202 71.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.7e-71 273.1 183 77.0
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.7e-71 273.1 250 59.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.7e-71 273.1 217 66.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.4e-68 263.5 199 67.8
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.0e-68 262.3 182 73.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.8e-68 260.8 183 75.4
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 9.8e-67 257.3 192 72.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.8e-66 255.0 196 66.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.3e-66 254.6 201 66.2
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.1e-65 250.8 197 64.5
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 9.1e-65 250.8 233 59.7
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.2e-64 250.4 222 60.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.2e-64 250.4 192 64.6
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.0e-63 247.3 204 64.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-63 246.5 196 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.0e-60 235.7 184 65.2
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 6.3e-58 228.0 201 59.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 8.3e-58 227.6 154 78.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 5.4e-57 224.9 182 64.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.9e-55 219.2 201 59.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.7e-48 196.1 120 83.3
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.6e-47 191.0 116 82.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.5e-46 190.3 190 57.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 2.4e-41 172.9 190 56.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.0e-39 167.5 94 91.5
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.6e-39 164.5 99 83.8
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.9e-38 163.3 99 83.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.7e-32 142.9 105 69.5
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.3e-30 134.8 79 78.5
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.5e-30 134.4 70 94.3
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.8e-28 130.2 97 71.1
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 4.0e-28 129.0 207 44.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.9e-26 122.1 100 66.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-24 117.1 87 64.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.3e-22 108.2 193 36.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.8e-20 103.6 198 37.4
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-20 103.2 98 62.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 4.4e-19 99.0 201 39.8
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 8.4e-18 94.7 78 64.1
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.4e-17 93.2 65 70.8
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.2e-17 92.8 201 38.8
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.0e-15 87.8 63 65.1
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.7e-15 87.0 73 57.5
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.6e-14 81.3 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 53 75.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-12 77.8 59 67.8
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.6e-11 71.6 174 31.6
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.2e-08 64.3 72 51.4


User provided reference genes

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