Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.5e-167 592.0 301 100.0
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 5.8e-156 554.3 300 94.0
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.7e-105 386.0 274 71.2
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 4.7e-105 385.2 294 67.3
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.9e-104 382.1 292 67.8
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.5e-103 380.2 269 72.9
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.0e-103 379.8 302 65.2
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.7e-102 376.7 294 67.3
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.5e-100 370.2 274 68.2
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.0e-100 369.8 281 66.5
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 7.7e-100 367.9 279 68.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.5e-99 364.8 303 64.7
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 8.5e-99 364.4 300 64.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 8.5e-99 364.4 280 66.1
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.1e-97 359.8 299 63.2
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.1e-97 359.8 299 63.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.1e-97 359.8 287 66.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.8e-96 356.7 286 66.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.9e-96 355.5 297 62.0
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-94 350.5 304 62.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.7e-94 350.1 282 63.8
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.2e-94 349.7 300 62.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 8.2e-94 347.8 285 62.8
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 8.2e-94 347.8 303 61.7
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 7.7e-92 341.3 281 62.6
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.7e-91 340.1 293 62.5
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.8e-88 330.1 279 60.2
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.3e-88 329.7 286 61.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.0e-88 329.3 301 57.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.2e-88 328.6 281 61.2
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 5.2e-88 328.6 292 58.9
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 6.7e-88 328.2 304 58.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.3e-86 323.9 300 57.3
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.3e-86 323.9 283 60.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.3e-86 323.9 280 60.4
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.7e-86 323.6 274 64.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 4.8e-86 322.0 295 58.0
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 3.1e-85 319.3 295 60.7
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 5.3e-85 318.5 274 59.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.6e-84 317.0 282 60.6
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 3.5e-84 315.8 300 58.3
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 3.8e-83 312.4 364 53.0
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 5.0e-83 312.0 295 59.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 6.5e-83 311.6 280 60.4
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 2.5e-82 309.7 300 57.3
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 7.2e-82 308.1 298 56.4
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 7.2e-82 308.1 278 59.0
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 9.4e-82 307.8 269 59.5
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 9.4e-82 307.8 301 56.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.6e-81 307.0 268 58.6
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.1e-81 306.6 301 55.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.6e-81 305.8 278 57.6
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 6.1e-81 305.1 294 55.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.0e-80 302.8 305 55.4
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-79 300.8 221 68.8
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.4e-79 298.9 283 57.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 4.4e-79 298.9 293 55.3
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 5.7e-79 298.5 270 56.7
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.5e-79 298.1 293 54.9
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 7.5e-79 298.1 268 58.6
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 7.5e-79 298.1 296 56.8
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.3e-78 297.4 271 57.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 4.8e-78 295.4 279 54.5
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 6.3e-78 295.0 283 54.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.1e-77 294.3 283 55.5
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.7e-76 289.7 243 61.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 3.5e-76 289.3 299 54.5
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 5.9e-76 288.5 267 55.4
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 3.3e-74 282.7 292 54.8
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 3.3e-74 282.7 302 52.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.2e-74 282.3 267 54.3
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.2e-74 282.3 267 54.3
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 2.1e-73 280.0 272 54.8
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.1e-73 280.0 254 58.3
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.6e-73 279.3 282 55.7
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.0e-72 277.7 303 50.8
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.4e-72 277.3 297 51.9
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.7e-70 270.4 284 53.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.7e-70 269.2 268 52.2
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 4.9e-70 268.9 269 52.8
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 4.9e-70 268.9 302 50.3
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.4e-69 267.3 298 52.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 2.0e-68 263.5 300 52.7
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 4.5e-68 262.3 288 50.7
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 2.9e-67 259.6 251 54.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.8e-67 259.2 313 47.0
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 6.6e-67 258.5 288 50.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.8e-65 253.1 301 48.2
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.0e-64 251.1 261 51.3
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.8e-64 250.4 261 54.4
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.5e-63 247.3 267 53.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 5.8e-63 245.4 300 48.3
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 9.8e-63 244.6 279 47.3
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 6.4e-62 241.9 273 47.6
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.6e-59 231.5 279 49.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 5.6e-58 228.8 218 54.1
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 8.0e-57 224.9 201 58.7
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 1.4e-56 224.2 299 44.1
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 4.0e-56 222.6 277 45.8
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 6.8e-56 221.9 276 44.9
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 2.2e-54 216.9 285 47.7
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 2.1e-52 210.3 262 45.4
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.1e-50 204.5 191 59.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.3e-48 196.8 246 45.1
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 3.7e-46 189.5 180 54.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.4e-45 186.8 192 58.3
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.3e-42 176.4 229 45.4
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 2.1e-36 157.1 135 57.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.5e-34 151.0 271 38.7
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 5.8e-31 139.0 155 48.4
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-30 137.9 124 58.9
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.9e-29 134.0 193 44.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.9e-29 134.0 262 35.9
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 3.9e-27 126.3 207 39.1
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.3e-26 122.1 131 55.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-23 114.4 180 42.2
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-23 114.4 180 42.2
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 9.9e-23 111.7 191 41.4
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 6.4e-22 109.0 176 41.5
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 8.4e-22 108.6 105 57.1
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 9.3e-21 105.1 200 39.5
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.3e-19 100.5 137 46.0
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 5.1e-19 99.4 163 40.5
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.1e-19 99.4 224 35.3
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 4.3e-18 96.3 96 52.1
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.8e-16 90.9 128 39.1
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 1.7e-14 84.3 158 36.1
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 6.4e-14 82.4 90 47.8
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 1.4e-13 81.3 65 56.9
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.2e-13 80.1 62 64.5
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.3e-13 78.6 62 64.5
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.3e-13 78.6 62 64.5
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.0e-12 75.9 149 36.2
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 2.3e-11 73.9 178 32.0
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 3.0e-11 73.6 89 48.3
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 3.0e-11 73.6 89 48.3
VMungo0720G0209 Vigna mungo HOM05D005448 ORTHO05D006405 3.9e-11 73.2 92 42.4
VMungo1309G2642 Vigna mungo HOM05D005448 ORTHO05D006405 8.7e-11 72.0 81 49.4
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.7e-11 72.0 63 55.6
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.8e-08 64.3 173 32.4
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 1.2e-07 61.6 54 64.8
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-07 61.2 131 35.1
VMungo1309G1229 Vigna mungo HOM05D000034 ORTHO05D000016 1.0e-06 58.5 62 51.6


User provided reference genes

Program Settings