Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1618.2 1030 100.0
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1489.9 1029 92.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 0.0e+00 1284.6 1034 85.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 0.0e+00 1217.2 1099 76.4
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.4e-302 1043.1 1043 74.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-301 1040.0 1041 74.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 8.0e-282 974.2 1036 68.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.9e-279 965.7 1046 70.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 7.8e-277 957.6 1033 69.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 3.4e-264 915.6 906 74.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 7.5e-264 914.4 1058 66.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.2e-263 912.9 1034 68.8
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.9e-262 909.8 1056 69.7
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.1e-262 907.9 1040 69.2
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.0e-260 902.5 1077 63.8
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.1e-257 894.0 1038 63.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.4e-254 883.6 1037 67.3
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.9e-254 883.2 1036 69.1
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.0e-253 878.2 1041 59.7
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 7.3e-251 871.3 911 69.9
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.6e-250 869.0 1032 67.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 6.2e-250 868.2 1032 67.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.0e-248 863.2 1037 68.3
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-247 860.1 918 66.7
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.8e-247 859.0 1030 67.5
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 4.9e-247 858.6 917 73.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.9e-246 856.7 921 70.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.2e-245 854.0 1041 66.0
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 7.8e-245 851.3 1032 67.5
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 7.8e-245 851.3 920 72.5
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.1e-243 847.4 1016 68.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.6e-243 844.3 1038 62.6
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.8e-242 842.0 1056 64.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.2e-242 841.6 1053 64.3
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.4e-241 839.7 1052 64.2
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.5e-240 837.0 914 72.8
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.5e-240 837.0 1034 67.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.5e-240 837.0 904 72.1
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.6e-240 836.3 1045 64.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.3e-239 833.9 1036 62.5
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.9e-239 832.8 922 71.7
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.4e-238 829.7 811 76.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 7.1e-238 828.2 1048 66.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.0e-236 824.3 1034 64.0
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.3e-236 823.2 1051 63.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-235 819.7 876 73.2
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.1e-233 814.3 917 71.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.1e-233 812.8 822 77.1
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.6e-232 809.7 1038 64.7
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 9.9e-232 807.7 899 69.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.7e-231 807.0 918 69.7
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.4e-231 805.1 824 76.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 8.4e-231 804.7 940 69.7
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.6e-229 800.4 1048 62.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.0e-228 797.7 1050 58.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.8e-228 797.0 1040 62.8
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.9e-228 795.8 913 70.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.3e-227 792.3 918 70.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-226 790.4 891 70.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.1e-226 790.0 882 70.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.1e-226 790.0 988 67.1
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.8e-226 788.9 988 67.0
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.1e-225 787.7 891 70.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-225 787.7 974 67.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 6.9e-225 785.0 807 73.5
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-224 784.3 882 70.7
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.2e-223 780.0 912 68.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 6.5e-223 778.5 984 65.3
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.1e-222 777.7 980 65.8
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 7.1e-222 775.0 1037 61.5
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 9.3e-222 774.6 1040 61.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.9e-220 769.2 908 68.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 5.1e-220 768.8 851 73.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.3e-219 766.1 1049 61.6
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.4e-219 765.0 913 69.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.8e-218 763.1 1036 60.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 6.3e-218 761.9 869 69.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.1e-217 761.1 879 67.6
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 9.0e-217 758.1 1019 62.6
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.2e-216 757.7 914 67.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.8e-215 752.7 921 68.2
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.5e-214 750.0 892 66.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.6e-213 747.3 912 68.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.7e-213 746.5 909 69.3
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 6.1e-213 745.3 1031 60.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.0e-212 744.6 1036 60.4
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.3e-212 744.2 1045 62.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.8e-212 743.8 949 66.1
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.1e-212 742.3 844 63.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.3e-211 739.6 903 67.2
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.3e-211 739.2 917 65.1
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.3e-210 737.6 931 61.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.2e-210 736.9 1012 59.3
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.1e-209 732.6 997 61.4
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.0e-208 730.3 895 67.9
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 4.5e-208 729.2 1028 60.0
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-206 724.5 858 68.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 3.2e-206 723.0 916 62.1
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 7.2e-206 721.8 1042 58.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 9.4e-206 721.5 1030 59.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 5.1e-204 715.7 915 66.8
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 8.8e-204 714.9 1026 59.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 5.7e-203 712.2 858 69.8
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.1e-201 708.0 1029 59.1
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 9.1e-201 704.9 895 62.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-200 704.5 922 63.6
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-200 704.1 922 63.4
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.9e-198 697.2 911 65.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.5e-198 695.7 885 65.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.2e-197 694.5 922 62.8
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-197 694.1 923 62.9
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 3.6e-197 693.0 1033 58.4
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.0e-196 691.4 928 62.6
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.8e-196 690.6 909 61.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.2e-196 689.1 866 70.2
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.7e-195 685.6 917 62.5
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 7.4e-195 685.3 897 64.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.5e-192 676.0 916 60.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.8e-191 672.9 849 59.5
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 8.5e-191 671.8 911 64.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.4e-185 653.7 816 66.5
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 4.5e-184 649.4 888 58.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.2e-182 643.3 908 57.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 4.7e-181 639.4 800 68.4
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 4.0e-180 636.3 866 58.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 6.8e-180 635.6 888 57.0
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 6.8e-180 635.6 888 57.0
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 5.7e-179 632.5 804 61.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.8e-178 630.2 907 59.5
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.1e-177 626.3 896 60.5
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.8e-175 619.8 741 63.2
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 8.3e-170 602.1 918 61.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.0e-168 597.4 915 55.5
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.8e-167 593.2 887 59.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.0e-167 592.8 897 55.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.9e-166 590.9 907 58.0
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-166 590.5 888 56.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.6e-166 589.3 685 67.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-165 587.8 897 55.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.7e-163 579.3 685 73.3
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 9.2e-161 572.0 915 54.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.1e-149 532.3 738 64.9
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 8.6e-143 512.3 1024 47.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 7.3e-142 509.2 781 47.2
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.7e-138 498.0 650 72.0
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.4e-138 496.1 927 48.7
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.5e-134 485.0 923 44.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.9e-134 484.6 803 54.8
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.2e-130 471.1 1034 37.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.3e-127 461.8 686 59.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.2e-121 440.7 851 52.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.6e-112 410.2 1014 40.3
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 1.0e-111 409.1 507 69.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.7e-111 406.4 645 67.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-107 393.3 1304 29.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 9.3e-105 386.0 477 53.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.7e-101 374.0 408 64.0
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.8e-101 373.6 746 51.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 5.0e-98 363.6 953 43.3
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 8.5e-98 362.8 651 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.2e-90 338.2 639 59.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.0e-87 329.3 603 43.9
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 9.7e-78 296.2 272 61.0
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.7e-72 277.3 326 79.8
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 2.3e-71 275.0 248 60.1
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 7.0e-52 210.3 226 50.9
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.7e-48 197.6 361 40.2
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.9e-44 185.7 299 44.5
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 4.0e-39 167.9 125 68.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 3.3e-33 148.3 119 63.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.6e-32 146.0 166 49.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.1e-32 145.6 88 83.0
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.4e-28 132.1 191 42.4
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.4e-20 104.4 66 83.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 9.6e-17 93.6 239 69.9
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.6e-11 74.7 62 54.8
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.9e-07 60.8 61 52.5
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 3.4e-06 58.5 352 28.1


User provided reference genes

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