Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 0.0e+00 1076.6 543 100.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.7e-278 962.2 558 88.2
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.3e-256 888.6 540 83.9
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.7e-244 848.6 538 80.7
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.0e-219 766.9 543 73.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.9e-214 748.8 537 72.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 8.4e-214 747.3 541 71.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-213 746.5 540 70.6
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.4e-213 745.7 547 70.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.6e-212 743.0 539 70.5
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.3e-211 740.0 545 71.4
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.6e-207 725.7 542 69.6
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 4.9e-206 721.5 544 69.1
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.2e-205 718.8 549 69.9
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.8e-203 713.0 545 68.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.9e-202 709.5 540 68.7
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.8e-200 703.0 543 67.0
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.0e-199 699.5 548 65.7
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.1e-197 693.7 542 67.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 6.1e-196 688.0 545 67.7
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.3e-195 686.8 548 65.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 9.7e-194 680.6 553 65.3
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.6e-193 679.9 551 66.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 6.9e-192 674.5 548 65.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.0e-191 672.9 543 65.9
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 7.7e-191 671.0 543 66.3
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.8e-190 668.7 547 65.6
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.0e-190 668.3 562 63.3
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.6e-188 663.3 543 64.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.1e-188 661.4 552 64.1
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 6.1e-188 661.4 553 64.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 2.3e-187 659.4 541 63.4
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 3.0e-187 659.1 547 63.4
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.9e-187 658.7 539 63.8
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 5.1e-187 658.3 541 63.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.7e-186 654.8 565 63.7
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.2e-185 651.0 542 62.5
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.1e-184 648.7 543 65.4
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.9e-184 647.9 544 64.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 9.1e-184 647.5 550 62.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.0e-183 646.4 534 64.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.6e-183 646.0 530 64.7
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.4e-183 645.6 551 63.2
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.5e-183 645.2 530 64.7
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 8.5e-182 641.0 544 63.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.2e-181 639.0 533 63.4
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.2e-180 637.1 544 62.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.6e-180 636.7 551 61.5
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 2.7e-180 636.0 521 63.5
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.6e-180 635.6 538 62.3
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 4.4e-178 628.6 551 61.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 5.7e-178 628.2 539 61.4
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 9.7e-178 627.5 552 61.6
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.3e-177 627.1 552 61.8
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.3e-177 627.1 552 61.8
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.3e-177 627.1 553 62.7
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.7e-177 625.5 543 62.2
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.1e-176 624.0 548 62.0
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.4e-176 623.6 551 60.4
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.3e-176 621.7 554 61.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 9.1e-176 620.9 534 62.7
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.5e-175 620.2 548 60.2
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.0e-175 619.8 561 58.8
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.6e-175 619.4 554 60.5
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.5e-175 618.6 542 60.3
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.2e-174 616.3 552 60.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 5.0e-174 615.1 549 62.7
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.5e-173 612.8 555 58.6
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.2e-173 612.5 544 60.3
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.2e-172 610.5 543 60.4
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.1e-172 609.8 544 58.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 3.6e-172 609.0 550 58.5
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 4.7e-172 608.6 551 58.4
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 4.7e-172 608.6 552 58.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.4e-171 607.1 562 58.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.0e-170 603.2 552 58.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 7.4e-170 601.3 538 58.9
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.3e-169 600.5 553 59.1
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.7e-169 600.1 554 58.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 4.8e-169 598.6 551 58.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.2e-169 597.8 564 58.2
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.1e-168 597.4 604 55.5
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.8e-168 596.7 559 57.6
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.5e-165 587.0 545 58.0
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.6e-164 583.6 581 56.6
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.6e-164 583.6 623 54.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 4.7e-164 582.0 478 66.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 3.4e-162 575.9 551 56.8
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.3e-161 573.9 541 56.6
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.7e-161 573.5 544 57.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.7e-161 572.4 541 57.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.1e-160 570.9 567 56.1
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.2e-159 567.4 597 52.1
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 3.5e-159 565.8 492 63.0
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 7.7e-159 564.7 521 59.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.2e-158 563.1 553 56.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 3.2e-157 559.3 499 58.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.2e-156 557.4 500 60.0
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.3e-155 553.1 552 54.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 3.0e-155 552.7 463 61.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.2e-154 550.8 518 57.7
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.8e-154 547.7 486 58.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.1e-152 542.3 574 52.1
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 9.1e-152 541.2 452 65.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.7e-151 539.7 547 55.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.5e-149 533.1 467 57.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 9.5e-149 531.2 517 55.3
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.4e-144 517.3 553 55.0
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.2e-144 516.2 535 51.2
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 9.2e-144 514.6 549 51.5
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 5.0e-142 508.8 492 53.3
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.9e-141 506.9 554 50.7
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-139 500.4 534 50.7
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 2.3e-139 500.0 538 50.9
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-130 471.1 549 49.2
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.7e-129 467.2 459 57.5
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.6e-124 450.7 447 54.8
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 8.1e-124 448.4 538 46.5
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.8e-122 442.2 551 46.3
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.3e-117 425.2 498 51.2
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 9.6e-117 424.9 304 69.1
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-115 419.5 572 42.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-115 419.5 572 42.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-115 419.5 569 43.4
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 4.9e-113 412.5 323 64.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.8e-111 405.2 537 44.5
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.3e-109 399.8 591 42.0
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.6e-108 396.4 504 44.8
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.3e-97 361.3 408 52.2
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.5e-95 353.2 554 39.7
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 3.4e-90 336.7 369 50.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 5.9e-82 309.3 388 50.3
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.7e-81 307.8 703 32.6
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.8e-75 287.7 458 40.8
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-74 284.6 183 71.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.7e-74 282.3 620 34.4
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-71 275.0 646 34.2
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 7.9e-71 272.3 165 74.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 5.5e-64 249.6 256 55.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 7.7e-58 229.2 185 69.7
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.4e-53 213.4 155 74.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.4e-45 187.2 189 48.1
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 6.3e-44 183.0 151 65.6
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.3e-44 182.6 277 40.8
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.0e-43 179.5 169 60.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.6e-39 168.3 148 65.5
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 8.3e-36 156.0 137 62.8
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.7e-34 149.4 132 57.6
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.9e-32 144.8 545 25.9
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.7e-26 124.4 94 64.9
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 8.0e-23 112.8 170 35.3
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 6.8e-22 109.8 180 33.9
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.2e-20 104.8 165 43.6
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 8.6e-17 92.8 68 61.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.5e-16 92.0 102 45.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 5.4e-11 73.6 39 84.6


User provided reference genes

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