Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.3e-309 1065.4 502 100.0
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.4e-278 961.1 502 90.6
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 2.8e-232 808.5 501 74.7
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.4e-231 805.4 505 74.9
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.9e-228 795.8 510 72.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.0e-227 790.4 500 72.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.0e-226 790.0 509 73.1
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 2.3e-226 788.9 551 69.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 6.8e-226 787.3 517 72.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.8e-226 786.9 500 72.2
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 5.7e-225 784.3 480 76.5
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.9e-224 781.2 462 76.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.3e-224 780.4 499 73.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-223 780.0 502 72.5
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 7.0e-223 777.3 462 76.0
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.0e-222 775.8 467 75.4
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 2.7e-222 775.4 428 80.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.5e-222 774.6 464 76.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 4.5e-222 774.6 505 71.3
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.7e-221 772.7 492 72.4
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.9e-221 771.9 466 75.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.1e-220 770.0 459 75.6
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.1e-220 770.0 459 75.6
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.3e-220 768.5 495 72.5
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 9.5e-220 766.9 500 70.2
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.6e-219 765.0 468 74.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.1e-219 764.2 489 72.6
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.0e-218 763.5 454 75.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.0e-218 761.9 432 78.0
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 3.0e-218 761.9 462 74.7
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.0e-217 759.2 494 70.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 3.4e-217 758.4 503 69.4
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 3.7e-216 755.0 502 69.9
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.9e-216 754.6 478 72.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.4e-215 753.1 459 74.7
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 4.1e-215 751.5 484 72.9
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-214 750.0 430 78.4
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-214 749.2 447 75.6
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.5e-214 748.4 471 73.5
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 3.5e-214 748.4 439 76.8
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 3.5e-214 748.4 500 68.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 7.8e-214 747.3 426 78.4
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.3e-213 746.5 468 72.6
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.3e-213 746.5 496 70.8
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.0e-213 745.3 477 72.3
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.0e-213 744.6 502 69.5
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 6.6e-213 744.2 475 72.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-212 743.4 447 74.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.1e-212 743.4 491 70.1
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.3e-212 741.9 501 69.5
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 7.3e-212 740.7 489 69.7
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.3e-212 740.7 501 69.5
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 6.2e-211 737.6 471 71.1
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.1e-210 736.9 483 70.0
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.4e-210 736.5 433 74.6
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.1e-210 735.3 492 67.3
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 7.5e-209 730.7 469 71.2
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 6.4e-208 727.6 524 66.4
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.4e-207 726.5 463 71.5
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.4e-207 726.5 497 69.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.2e-207 725.3 470 71.1
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 7.0e-207 724.2 466 71.2
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.2e-206 723.4 466 71.0
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 2.7e-206 722.2 478 68.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 6.0e-206 721.1 511 66.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.0e-205 720.3 467 71.1
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.0e-205 720.3 467 71.1
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 6.6e-205 717.6 504 66.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.5e-204 716.5 487 68.4
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 5.6e-204 714.5 472 68.9
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 9.5e-204 713.8 491 68.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.5e-204 713.8 492 68.1
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.2e-203 713.4 505 66.9
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.1e-203 712.6 451 70.5
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.1e-203 712.6 462 68.6
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 8.1e-203 710.7 513 65.5
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.1e-202 710.3 491 67.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 6.8e-202 707.6 435 71.0
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 3.4e-201 705.3 468 68.4
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 9.9e-201 703.7 446 70.4
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.3e-200 703.4 468 69.9
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.3e-200 703.4 433 72.3
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.9e-200 702.2 424 74.8
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 4.9e-200 701.4 433 72.1
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 6.4e-200 701.0 466 68.5
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.0e-198 694.5 443 69.3
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 3.3e-196 688.7 474 68.4
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.6e-196 688.0 454 68.9
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.1e-194 683.7 445 68.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 5.2e-194 681.4 408 75.5
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.0e-193 679.5 426 71.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.9e-191 672.9 554 59.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 5.6e-188 661.4 380 78.4
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 5.6e-188 661.4 380 78.4
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.6e-185 652.5 428 70.3
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-184 648.3 436 62.8
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 4.9e-184 648.3 375 77.1
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 6.4e-184 647.9 378 77.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.4e-183 646.0 501 60.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.2e-182 643.7 495 62.8
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.9e-181 638.6 498 62.9
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 6.6e-181 637.9 380 77.4
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.7e-181 637.5 463 65.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.8e-179 632.5 394 73.9
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.1e-172 610.5 325 83.4
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 9.6e-172 607.4 366 74.6
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 6.9e-170 601.3 463 62.4
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.1e-167 594.0 518 57.9
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.4e-167 593.6 430 67.0
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 4.6e-166 588.6 418 64.6
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 9.0e-162 574.3 415 65.1
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.8e-161 571.6 457 58.9
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.7e-158 562.8 426 59.9
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 9.4e-151 537.7 431 62.4
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.4e-149 533.9 396 60.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 5.7e-148 528.5 455 54.7
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 7.9e-142 508.1 320 69.1
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.5e-137 493.8 427 56.2
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 3.7e-131 472.6 269 76.6
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.5e-124 448.4 256 78.5
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.4e-101 374.4 218 74.3
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 5.8e-100 369.0 456 41.2
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.7e-80 304.3 184 73.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 8.4e-75 285.4 162 77.8
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 3.5e-73 280.0 426 40.8
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.4e-61 241.5 148 70.9
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.4e-58 229.6 367 36.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.6e-57 226.5 169 65.7
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.0e-56 225.3 110 86.4
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.4e-53 214.2 169 63.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 2.4e-53 214.2 111 88.3
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.0e-48 197.2 118 75.4
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 8.7e-48 195.7 148 59.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.6e-41 174.9 185 50.8
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.0e-37 159.1 111 66.7
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.8e-30 137.5 186 44.1
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 3.6e-25 120.6 60 90.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.7e-17 93.6 61 63.9
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.2e-09 68.9 41 70.7
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.0e-07 61.6 141 35.5


User provided reference genes

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