Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.6e-36 154.8 77 100.0
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 1.1e-13 79.7 62 67.7
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 4.1e-13 77.8 59 66.1
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 6.9e-13 77.0 62 66.1
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 6.9e-13 77.0 62 66.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 9.1e-13 76.6 61 65.6
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.5e-12 75.9 62 62.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.0e-12 75.5 62 64.5
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 2.6e-12 75.1 61 63.9
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 4.5e-12 74.3 61 62.3
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 5.9e-12 73.9 62 62.9
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 7.7e-12 73.6 62 62.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 1.0e-11 73.2 62 62.9
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.0e-11 73.2 62 62.9
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 1.0e-11 73.2 53 67.9
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 1.3e-11 72.8 59 61.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 1.7e-11 72.4 61 60.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.7e-11 72.4 59 62.7
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.7e-11 72.4 61 59.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.2e-11 72.0 61 62.3
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 2.9e-11 71.6 61 62.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 2.9e-11 71.6 61 59.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 3.8e-11 71.2 61 60.7
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 5.0e-11 70.9 61 57.4
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 6.5e-11 70.5 59 59.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 6.5e-11 70.5 61 60.7
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 6.5e-11 70.5 61 60.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 6.5e-11 70.5 47 68.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 8.5e-11 70.1 58 60.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 8.5e-11 70.1 59 61.0
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 8.5e-11 70.1 59 61.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 1.1e-10 69.7 50 66.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 1.4e-10 69.3 61 59.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.9e-10 68.9 61 57.4
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.9e-10 68.9 62 54.8
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.9e-10 68.9 62 54.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 1.9e-10 68.9 62 54.8
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 2.5e-10 68.6 62 54.8
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 2.5e-10 68.6 62 54.8
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 2.5e-10 68.6 70 51.4
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 2.5e-10 68.6 47 66.0
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 2.5e-10 68.6 61 57.4
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.2e-10 68.2 61 57.4
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 3.2e-10 68.2 50 64.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 4.2e-10 67.8 59 61.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 4.2e-10 67.8 59 57.6
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 5.5e-10 67.4 48 70.8
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 5.5e-10 67.4 49 67.3
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 9.4e-10 66.6 59 59.3
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-09 66.2 61 55.7
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.6e-09 65.9 61 55.7
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.1e-09 65.5 59 61.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 2.7e-09 65.1 61 57.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.1e-09 63.9 49 59.2
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.1e-09 63.9 49 59.2
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 6.1e-09 63.9 62 56.5
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.1e-09 63.9 61 54.1
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 7.9e-09 63.5 62 53.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 7.9e-09 63.5 62 53.2
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 1.0e-08 63.2 52 61.5
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.0e-08 63.2 61 52.5
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 1.4e-08 62.8 61 55.7
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 1.4e-08 62.8 52 63.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 1.4e-08 62.8 61 52.5
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 3.0e-08 61.6 60 51.7
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 3.0e-08 61.6 47 59.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 3.9e-08 61.2 62 51.6
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 8.8e-08 60.1 62 51.6
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 8.8e-08 60.1 60 48.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 8.8e-08 60.1 60 48.3
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 8.8e-08 60.1 60 48.3
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 8.8e-08 60.1 60 48.3
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 8.8e-08 60.1 53 52.8
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 8.8e-08 60.1 61 55.7
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 1.1e-07 59.7 47 57.4
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 1.5e-07 59.3 52 57.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 1.5e-07 59.3 50 54.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 2.0e-07 58.9 50 58.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 2.6e-07 58.5 60 48.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 2.6e-07 58.5 50 52.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 3.3e-07 58.2 60 48.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 3.3e-07 58.2 52 53.8
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 4.4e-07 57.8 49 49.0
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 7.4e-07 57.0 61 54.1
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 1.3e-06 56.2 52 51.9
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 1.7e-06 55.8 60 45.0
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 1.7e-06 55.8 60 45.0
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 2.2e-06 55.5 47 57.4
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 4.8e-06 54.3 60 41.7


User provided reference genes

Program Settings